RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA724011", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA724011 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27410451 27410451 PRJNA724011_P_NODE_105243_length_244_cov_0.900585_g104220_i0 PRJNA724011 105243 244 0.900585 2.1974274 Pseudomonadati 3379134 Bacteria Bacteria 57.8 1.96e-7   NR MDF7799449.1 3035704 g104220 i0 62.2 1.77049180327869 45 17 55.3 0 241 107 466 510 MDF7799449.1 FG-GAP repeat protein [Pontiellaceae bacterium B1224] diamond 432 58.2 0.993127147766323 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Pontiellaceae   Pontiellaceae bacterium B1224
27442097 27442097 PRJNA724011_P_NODE_91603_length_254_cov_2.121547_g90580_i0 PRJNA724011 91603 254 2.121547 5.38872938 Bacteria 2 Bacteria Bacteria 65.5 4.16e-10   NR HNX35922.1 2212473 g90580 i0 41.4 6.61417322834646 70 37 82.7 1 3 212 482 547 HNX35922.1 glycoside hydrolase family 97 N-terminal domain-containing protein [Kiritimatiellia bacterium] diamond 1680 65.5 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28820285 28820285 PRJNA724011_P_NODE_26888_length_541_cov_3.130342_g25872_i0 PRJNA724011 26888 541 3.130342 16.93515022 Pontiella sp. 2837462 Bacteria Bacteria 181 3.8e-51   NR MBT8046411.1 2837462 g25872 i0 61.9 6.41589648798521 147 54 81.5 1 1 441 365 509 MBT8046411.1 acetate--CoA ligase [Pontiella sp.] diamond 3471 181 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Pontiellaceae Pontiella Pontiella sp.
30589186 30589186 PRJNA724011_P_NODE_56273_length_342_cov_1.141264_g55250_i0 PRJNA724011 56273 342 1.141264 3.90312288 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 50.4 2.38e-4   NR MDA3926547.1 2212473 g55250 i0 29.8 0.912280701754386 104 73 91.2 0 3 314 1076 1179 MDA3926547.1 hypothetical protein [Kiritimatiellia bacterium] diamond 312 50.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31000118 31000118 PRJNA724011_P_NODE_56574_length_341_cov_1.115672_g55551_i0 PRJNA724011 56574 341 1.115672 3.80444152 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 52.4 4.4e-5   NR MCS6772338.1 2212473 g55551 i0 42.3 1.45161290322581 71 38 59.8 1 96 299 295 365 MCS6772338.1 branched-chain amino acid ABC transporter substrate-binding protein [Kiritimatiellia bacterium] diamond 495 52.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;