RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA724011", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 8 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 8 ✖

bioproject 1

  • PRJNA724011 · 8 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9638881 9638881 PRJNA724011_P_NODE_109348_length_241_cov_0.916667_g108325_i0 PRJNA724011 109348 241 0.916667 2.20916747 Methanobrevibacter sp. 66852 Archaea Archaea 146 7.88e-39   NR MBO7518297.1 66852 g108325 i0 82.3 5.91286307053942 79 14 98.3 0 241 5 436 514 MBO7518297.1 hypothetical protein [Methanobrevibacter sp.] diamond 1425 146 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27399963 27399963 PRJNA724011_P_NODE_54963_length_346_cov_2.816850_g53940_i0 PRJNA724011 54963 346 2.81685 9.746301 Methanobacterium sp. 2164 Archaea Archaea 80.9 5.3e-15   NR MCE5214594.1 2164 g53940 i0 44.2 0.745664739884393 86 48 74.6 0 72 329 562 647 MCE5214594.1 carboxypeptidase regulatory-like domain-containing protein [Methanobacterium sp.] diamond 258 80.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
27873388 27873388 PRJNA724011_P_NODE_4325_length_1491_cov_3.806770_g3845_i0 PRJNA724011 4325 1491 3.80677 56.7589407 Methanobrevibacter sp. 66852 Archaea Archaea 52.4 0.00586   NR WP_292749283.1 66852 g3845 i0 28.7 0.27364185110664 136 84 24.7 3 1053 1421 268 403 WP_292749283.1 C1 family peptidase [Methanobrevibacter sp.] diamond 408 52.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29462224 29462224 PRJNA724011_P_NODE_77950_length_282_cov_1.105263_g76927_i0 PRJNA724011 77950 282 1.105263 3.11684166 root 1 Root_unresolved Root_unresolved 47.8 8.99e-4   NR WP_330039973.1 66852 g76927 i0 31.8 1.6595744680851101 88 46 83 3 1 234 158 241 WP_330039973.1 potassium channel family protein [Methanobrevibacter sp.] diamond 468 48.1 0.993762993762994 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29778183 29778183 PRJNA724011_P_NODE_82471_length_272_cov_1.547739_g81448_i0 PRJNA724011 82471 272 1.547739 4.20985008 root 1 Root_unresolved Root_unresolved 53.5 8.43e-6   NR WP_209731630.1 2188 g81448 i0 42.9 5.19485294117647 63 36 69.5 0 267 79 198 260 WP_209731630.1 AAA domain-containing protein [Methanococcus voltae] diamond 1413 53.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus voltae
31895807 31895807 PRJNA724011_P_NODE_35177_length_458_cov_1.927273_g34158_i0 PRJNA724011 35177 458 1.927273 8.82691034 Methanosphaera 2316 Archaea Archaea 73.2 5.63e-12   NR WP_294967419.1 262501 g34158 i0 52.4 2.03711790393013 63 25 38.6 2 219 395 70 131 WP_294967419.1 LicD family protein [uncultured Methanosphaera sp.] diamond 933 73.6 0.994565217391304 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera uncultured Methanosphaera sp.
32370616 32370616 PRJNA724011_P_NODE_11599_length_914_cov_4.183115_g10729_i0 PRJNA724011 11599 914 4.183115 38.2336711 root 1 Root_unresolved Root_unresolved 102 9.04e-22   NR MDR3292372.1 66852 g10729 i0 32.3 3.85339168490153 235 133 69.9 7 50 688 10 240 MDR3292372.1 aquaporin family protein [Methanobrevibacter sp.] diamond 3522 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32896234 32896234 PRJNA724011_P_NODE_84020_length_269_cov_1.571429_g82997_i0 PRJNA724011 84020 269 1.571429 4.22714401 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 60.1 4.06e-8   NR WP_295723618.1 253161 g82997 i0 39.5 3.37918215613383 76 42 84.8 2 2 229 775 846 WP_295723618.1 cyclic nucleotide-binding serine/threonine-protein kinase [uncultured Methanobrevibacter sp.] diamond 909 60.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;