RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA724011", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA724011 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24937383 24937383 PRJNA724011_P_NODE_800_length_2756_cov_7.703317_g664_i0 PRJNA724011 800 2756 7.703317 212.30341652 Prosthecochloris 1101 Bacteria Bacteria 1295 0   NR WP_012506171.1 1102 g664 i0 75.1 11.0986937590711 783 193 85 2 2599 257 14 796 WP_012506171.1 phosphoketolase [Prosthecochloris aestuarii] diamond 30588 1301 0.995388162951576 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris aestuarii
27052319 27052319 PRJNA724011_P_NODE_98002_length_248_cov_1.405714_g96979_i0 PRJNA724011 98002 248 1.405714 3.48617072 Chlorobiales bacterium 2723030 Bacteria Bacteria 46.6 0.00154   NR MCX6179188.1 2723030 g96979 i0 35 0.725806451612903 60 38 72.6 1 18 197 45 103 MCX6179188.1 tetratricopeptide repeat protein [Chlorobiales bacterium] diamond 180 46.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales     Chlorobiales bacterium
27305081 27305081 PRJNA724011_P_NODE_24223_length_578_cov_2.940594_g23207_i0 PRJNA724011 24223 578 2.940594 16.99663332 Chlorobaculum sp. 2053530 Bacteria Bacteria 167 1.15e-46   NR NTW53782.1 2053530 g23207 i0 54.1 1.5363321799308 148 68 76.8 0 2 445 245 392 NTW53782.1 acetate/propionate family kinase [Chlorobaculum sp.] diamond 888 167 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp.
28094404 28094404 PRJNA724011_P_NODE_26945_length_540_cov_3.299786_g25929_i0 PRJNA724011 26945 540 3.299786 17.8188444 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 137 4.979999999999998e-35   NR MEI7824811.1 2067991 g25929 i0 50.4 2.85 129 63 71.7 1 153 539 7 134 MEI7824811.1 acetate/propionate family kinase [Chlorobiaceae bacterium] diamond 1539 137 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
28441908 28441908 PRJNA724011_P_NODE_37066_length_443_cov_1.402703_g36043_i0 PRJNA724011 37066 443 1.402703 6.21397429 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 137 1.39e-34   NR MDW8465497.1 2969135 g36043 i0 49.3 4.01580135440181 148 72 98.9 2 2 439 462 608 MDW8465497.1 glutamine synthetase III [Chloroherpetonaceae bacterium] diamond 1779 137 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
30410490 30410490 PRJNA724011_P_NODE_57813_length_336_cov_2.300380_g56790_i0 PRJNA724011 57813 336 2.30038 7.7292768 Pseudomonadati 3379134 Bacteria Bacteria 82 2.33e-16   NR RFM23943.1 1868324 g56790 i0 42.6 6.78571428571429 108 60 95.5 2 16 336 22 128 RFM23943.1 MAG: hypothetical protein D0433_08460 [Candidatus Thermochlorobacter aerophilum] diamond 2280 82.4 0.995145631067961 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Candidatus Thermochlorobacteriaceae Candidatus Thermochlorobacter Candidatus Thermochlorobacter aerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;