RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA722925" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA722925 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6297747 6297747 PRJNA722925_S_NODE_4505_length_212_cov_1.348571_g4442_i0 PRJNA722925 4505 212 1.348571 2.85897052 Treponema 157 Bacteria Bacteria 381 2.0899999999999994e-101   NTclustered gi|2265136109|gb|CP051197.1| 69710 g4442 i0 99.057 178.75 212 2 100 0 1 212 326434 326223 Treponema vincentii strain OMZ 802 chromosome, complete genome blastn 37895 381 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
16496637 16496637 PRJNA722925_S_NODE_6553_length_182_cov_1.365517_g6490_i0 PRJNA722925 6553 182 1.365517 2.48524094 Treponema 157 Bacteria Bacteria 337 3.82e-88   NTclustered gi|2586376|gb|AF023053.1|AF023053 67506 g6490 i0 100 104.994505494505 182 0 100 0 1 182 765 584 Treponema sp. I:F:D13 16S ribosomal RNA gene, complete sequence blastn 19109 337 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. I:F:D13

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;