RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA722925", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA722925 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15222268 15222268 PRJNA722925_S_NODE_9572_length_159_cov_1.639344_g9509_i0 PRJNA722925 9572 159 1.639344 2.60655696 Campylobacter 194 Bacteria Bacteria 294 1.98e-75   NTclustered gi|1207769205|gb|MF351718.1| 199 g9509 i0 100 231.327044025157 159 0 100 0 1 159 1458 1300 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 36781 294 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
27209916 27209916 PRJNA722925_S_NODE_3362_length_240_cov_20.950739_g3299_i0 PRJNA722925 3362 240 20.950739 50.2817736 Helicobacter pylori 210 Bacteria Bacteria 59.3 1.2e-9   NR GAA9036680.1 210 g3299 i0 100 0.3375 27 0 33.8 0 238 158 5 31 GAA9036680.1 hypothetical protein Kyoto181A_9030 [Helicobacter pylori] diamond 81 59.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;