RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA721440", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Peploviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA721440 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5813720 5813720 PRJNA721440_S_NODE_2905_length_331_cov_284.294326_g2779_i0 PRJNA721440 2905 331 284.294326 941.01421906 Cytomegalovirus macacinebeta3 3050308 Viruses Viruses 121 8.419999999999999e-23   NTclustered gi|1953437643|gb|MT157331.1| 47929 g2779 i0 96.053 0.734138972809668 76 0 22 2 2 74 162963 162888 Macacine betaherpesvirus 3 strain UCD59, complete genome blastn 243 121 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Cytomegalovirus Cytomegalovirus macacinebeta3
18561987 18561987 PRJNA721440_S_NODE_3395_length_309_cov_16.330769_g3269_i0 PRJNA721440 3395 309 16.330769 50.46207621 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 52.8 0.029   NTclustered gi|2609791700|gb|OR652422.1| 10376 g3269 i0 100 0.0906148867313916 28 0 9 0 282 309 9242 9269 Human gammaherpesvirus 4 strain 725, partial genome blastn 28 52.8 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
19837061 19837061 PRJNA721440_S_NODE_10956_length_198_cov_3.765101_g10830_i0 PRJNA721440 10956 198 3.765101 7.45489998 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 56.5 0.001   NTclustered gi|1465382783|emb|LS992247.1| 10376 g10830 i0 97.059 0.343434343434343 34 0 17 1 1 33 58024 58057 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 68 56.5 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
25420209 25420209 PRJNA721440_S_NODE_4380_length_280_cov_22.835498_g4254_i0 PRJNA721440 4380 280 22.835498 63.9393944 root 1 Root_unresolved Root_unresolved 65.8 3.31e-6   NTclustered gi|2609791700|gb|OR652422.1| 10376 g4254 i0 100 1.51428571428571 35 0 13 0 10 44 9277 9243 Human gammaherpesvirus 4 strain 725, partial genome blastn 424 65.8 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;