RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA721440" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13463900 13463900 PRJNA721440_S_NODE_17611_length_167_cov_2.271186_g17485_i0 PRJNA721440 17611 167 2.271186 3.79288062 Proleptomonas faecicola 149084 SAR_Eukaryotes SAR_Eukaryotes 206 1.02e-48   NTclustered gi|302026150|gb|GQ377654.1| 149084 g17485 i0 89.222 74.562874251497007 167 14 99 4 1 165 568 732 Proleptomonas faecicola beta-tubulin (Btub) gene, partial cds blastn 12452 206 1 Eukaryota Sar   Cercozoa   Glissomonadida   Proleptomonas Proleptomonas faecicola
19837084 19837084 PRJNA721440_S_NODE_18136_length_166_cov_1.170940_g18010_i0 PRJNA721440 18136 166 1.17094 1.9437604 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 200 4.69e-47   NTclustered gi|2651357794|gb|PP174308.1| 1979794 g18010 i0 88.554 96.9759036144578 166 18 100 1 1 166 3852 3688 Cercomonas sp. isolate JGP5 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16098 200 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
21112745 21112745 PRJNA721440_S_NODE_15857_length_173_cov_1.032258_g15731_i0 PRJNA721440 15857 173 1.032258 1.78580634 Proleptomonas faecicola 149084 SAR_Eukaryotes SAR_Eukaryotes 193 8.21e-45   NTclustered gi|302026150|gb|GQ377654.1| 149084 g15731 i0 92.537 54.1907514450867 134 10 77 0 1 134 528 395 Proleptomonas faecicola beta-tubulin (Btub) gene, partial cds blastn 9375 193 1 Eukaryota Sar   Cercozoa   Glissomonadida   Proleptomonas Proleptomonas faecicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;