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contig_metadata

23 rows where bioproject = "PRJNA721440" and tax_phylum = "Bacillota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA721440 · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1193623 1193623 PRJNA721440_S_NODE_10121_length_204_cov_1.058065_g9995_i0 PRJNA721440 10121 204 1.058065 2.1584526 Streptococcus 1301 Bacteria Bacteria 372 1.2e-98   NTclustered gi|2579561176|gb|CP134469.1| 1307 g9995 i0 99.51 391.019607843137 204 1 100 0 1 204 21521 21724 Streptococcus suis strain M104170_C2 chromosome, complete genome blastn 79768 372 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis
1193627 1193627 PRJNA721440_S_NODE_16081_length_172_cov_1.536585_g15955_i0 PRJNA721440 16081 172 1.536585 2.6429262 Catenibacterium 135858 Bacteria Bacteria 56.5 0.001   NTclustered gi|2299336055|gb|CP102271.1| 100886 g15955 i0 100 0.348837209302326 30 0 17 0 113 142 577955 577926 Catenibacterium mitsuokai strain DSM 15897 chromosome, complete genome blastn 60 56.5 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Catenibacterium Catenibacterium mitsuokai
1193628 1193628 PRJNA721440_S_NODE_17721_length_167_cov_1.245763_g17595_i0 PRJNA721440 17721 167 1.245763 2.08042421 Bacillati 1783272 Bacteria Bacteria 298 1.63e-76   NTclustered gi|1176884116|gb|CP020463.1| 1282 g17595 i0 98.802 496.850299401198 167 2 100 0 1 167 2278287 2278121 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 82974 298 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
3261455 3261455 PRJNA721440_S_NODE_21063_length_156_cov_3.598131_g20937_i0 PRJNA721440 21063 156 3.598131 5.61308436 FCB group 1783270 Bacteria Bacteria 73.6 5.5e-14   NR WP_203087144.1 79881 g20937 i0 59.6 9.88461538461539 52 21 100 0 156 1 24 75 WP_203087144.1 PAS domain-containing protein [Alkalicoccobacillus gibsonii] diamond 1542 73.6 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Alkalicoccobacillus Alkalicoccobacillus gibsonii
4538520 4538520 PRJNA721440_S_NODE_10004_length_205_cov_0.871795_g9878_i0 PRJNA721440 10004 205 0.871795 1.78717975 Lactobacillus sp. IBH004 2879107 Bacteria Bacteria 329 7.39e-86   NTclustered gi|2426115884|gb|CP110217.2| 2879107 g9878 i0 95.61 338.375609756098 205 9 100 0 1 205 1321156 1321360 Lactobacillus sp. IBH004 chromosome, complete genome blastn 69367 329 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus sp. IBH004
6297672 6297672 PRJNA721440_S_NODE_19325_length_163_cov_1.728070_g19199_i0 PRJNA721440 19325 163 1.72807 2.8167541 Pediococcus 1253 Bacteria Bacteria 298 1.58e-76   NTclustered gi|1035434175|gb|CP015918.1| 1255 g19199 i0 100 450.398773006135 161 0 99 0 3 163 128686 128846 Pediococcus pentosaceus strain wikim20, complete genome blastn 73415 298 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus
6297677 6297677 PRJNA721440_S_NODE_7385_length_229_cov_1.355556_g7259_i0 PRJNA721440 7385 229 1.355556 3.10422324 root 1 Root_unresolved Root_unresolved 424 3.76e-114   NTclustered gi|2556673542|gb|OR367734.1| 1282 g7259 i0 100 174.991266375546 229 0 100 0 1 229 1410 1182 Staphylococcus epidermidis strain A3 16S ribosomal RNA gene, partial sequence blastn 40073 424 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
7571461 7571461 PRJNA721440_S_NODE_8466_length_217_cov_3.398810_g8340_i0 PRJNA721440 8466 217 3.39881 7.3754177 root 1 Root_unresolved Root_unresolved 379 7.739999999999998e-101   NTclustered gi|1370563981|gb|CP027781.1| 1491 g8340 i0 99.052 97.2073732718894 211 2 97 0 1 211 3985092 3985302 Clostridium botulinum strain MAP 5 chromosome, complete genome blastn 21094 379 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum
11397234 11397234 PRJNA721440_S_NODE_4729_length_272_cov_2.376682_g4603_i0 PRJNA721440 4729 272 2.376682 6.46457504 Erysipelotrichales 526525 Bacteria Bacteria 62.1 4.15e-5   NTclustered gi|2777632677|dbj|AP031432.1| 1982626 g4603 i0 97.297 0.544117647058823 37 0 13 1 27 62 1565408 1565444 Faecalibacillus intestinalis i32-0019-2J8 DNA, complete genome blastn 148 62.1 1 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Coprobacillaceae Faecalibacillus Faecalibacillus intestinalis
11397236 11397236 PRJNA721440_S_NODE_6189_length_244_cov_3.769231_g6063_i0 PRJNA721440 6189 244 3.769231 9.19692364 root 1 Root_unresolved Root_unresolved 121 5.949999999999999e-23   NTclustered gi|1878067685|dbj|LC566215.1| 1352 g6063 i0 93.976 34.4467213114754 83 0 32 4 161 239 128 47 Enterococcus faecium EV0426-12 plasmid pIHVA-EV0426-12 DNA, complete sequence blastn 8405 122 0.991803278688525 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecium
12673244 12673244 PRJNA721440_S_NODE_20930_length_157_cov_2.157407_g20804_i0 PRJNA721440 20930 157 2.157407 3.38712899 Pediococcus 1253 Bacteria Bacteria 279 5.46e-71   NTclustered gi|2811772618|gb|PQ396677.1| 1255 g20804 i0 98.726 111.866242038217 157 2 100 0 1 157 675 831 Pediococcus pentosaceus strain V9313 16S ribosomal RNA gene, partial sequence blastn 17563 279 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus
13947469 13947469 PRJNA721440_S_NODE_17851_length_167_cov_0.796610_g17725_i0 PRJNA721440 17851 167 0.79661 1.3303387 Staphylococcus 1279 Bacteria Bacteria 292 7.58e-75   NTclustered gi|1928723242|gb|CP042341.1| 29388 g17725 i0 98.204 583.365269461078 167 3 100 0 1 167 786217 786051 Staphylococcus capitis strain BN2 chromosome, complete genome blastn 97422 292 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus capitis
15222183 15222183 PRJNA721440_S_NODE_11492_length_195_cov_1.082192_g11366_i0 PRJNA721440 11492 195 1.082192 2.1102744 Pediococcus 1253 Bacteria Bacteria 361 2.46e-95   NTclustered gi|1035434175|gb|CP015918.1| 1255 g11366 i0 100 472.676923076923 195 0 100 0 1 195 127266 127072 Pediococcus pentosaceus strain wikim20, complete genome blastn 92172 361 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus
17288175 17288175 PRJNA721440_S_NODE_12614_length_188_cov_0.956835_g12488_i0 PRJNA721440 12614 188 0.956835 1.7988498 Staphylococcus epidermidis 1282 Bacteria Bacteria 315 1.8599999999999999e-81   NTclustered gi|2180323311|gb|CP090985.1| 1282 g12488 i0 96.809 520.739361702128 188 6 100 0 1 188 1636913 1637100 Staphylococcus epidermidis strain 50D chromosome, complete genome blastn 97899 315 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
20320061 20320061 PRJNA721440_S_NODE_9856_length_206_cov_1.528662_g9730_i0 PRJNA721440 9856 206 1.528662 3.14904372 Streptococcus 1301 Bacteria Bacteria 359 9.47e-95   NTclustered gi|1782758915|gb|CP018189.1| 1304 g9730 i0 98.058 563.203883495146 206 4 100 0 1 206 17919 18124 Streptococcus salivarius strain ICDC3 chromosome, complete genome blastn 116020 359 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus salivarius
27589304 27589304 PRJNA721440_S_NODE_5944_length_248_cov_1.743719_g5818_i0 PRJNA721440 5944 248 1.743719 4.32442312 Bacillota bacterium 1879010 Bacteria Bacteria 45.1 0.00472   NR MBT9153026.1 1879010 g5818 i0 47.1 0.616935483870968 51 26 60.5 1 202 53 32 82 MBT9153026.1 Butyrate--acetoacetate CoA-transferase subunit B [Bacillota bacterium] diamond 153 45.1 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
28547090 28547090 PRJNA721440_S_NODE_11487_length_195_cov_1.328767_g11361_i0 PRJNA721440 11487 195 1.328767 2.59109565 FCB group 1783270 Bacteria Bacteria 55.1 8.8e-7   NR MBP2654693.1 1879010 g11361 i0 42.2 3.86153846153846 64 37 98.5 0 194 3 621 684 MBP2654693.1 amino acid adenylation domain protein [Bacillota bacterium] diamond 753 55.1 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
31632213 31632213 PRJNA721440_S_NODE_1556_length_431_cov_2.900524_g1430_i0 PRJNA721440 1556 431 2.900524 12.50125844 Clostridia bacterium 2044939 Bacteria Bacteria 49.3 8.85e-5   NR MBQ6847602.1 2044939 g1430 i0 35.4 0.549883990719258 79 43 54.3 2 15 248 4 75 MBQ6847602.1 acyl carrier protein [Clostridia bacterium] diamond 237 49.3 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
31990618 31990618 PRJNA721440_S_NODE_8898_length_213_cov_2.530488_g8772_i0 PRJNA721440 8898 213 2.530488 5.38993944 Ructibacterium 2884634 Bacteria Bacteria 86.3 1.19e-17   NR MBQ8995572.1 2485925 g8772 i0 68.5 5.32394366197183 54 17 76.1 0 162 1 439 492 MBQ8995572.1 ABC transporter ATP-binding protein [Oscillospiraceae bacterium] diamond 1134 86.3 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
32106781 32106781 PRJNA721440_S_NODE_15538_length_174_cov_1.656000_g15412_i0 PRJNA721440 15538 174 1.656 2.88144 Anaerovoracaceae bacterium 3030912 Bacteria Bacteria 44.3 0.00434   NR MEF9921931.1 3030912 g15412 i0 45.1 2.6551724137931 51 25 82.8 1 28 171 293 343 MEF9921931.1 HAMP domain-containing sensor histidine kinase [Anaerovoracaceae bacterium] diamond 462 44.3 1 Bacteria   Bacillati Bacillota Clostridia Peptostreptococcales Anaerovoracaceae   Anaerovoracaceae bacterium
32370606 32370606 PRJNA721440_S_NODE_8519_length_217_cov_1.232143_g8393_i0 PRJNA721440 8519 217 1.232143 2.67375031 Bacteria 2 Bacteria Bacteria 111 9.039999999999999e-30   NR MCA9749906.1 1965302 g8393 i0 85.9 1.963133640553 71 10 98.2 0 3 215 32 102 MCA9749906.1 F0F1 ATP synthase subunit A [Romboutsia sp.] diamond 426 111 1 Bacteria   Bacillati Bacillota Clostridia Peptostreptococcales Peptostreptococcaceae Romboutsia Romboutsia sp.
32528847 32528847 PRJNA721440_S_NODE_4639_length_274_cov_3.311111_g4513_i0 PRJNA721440 4639 274 3.311111 9.07244414 Bacteria 2 Bacteria Bacteria 55.1 2.49e-6   NR MCI8599263.1 1898203 g4513 i0 47.5 3.47080291970803 61 30 66.8 2 274 92 131 189 MCI8599263.1 VWA domain-containing protein [Lachnospiraceae bacterium] diamond 951 55.5 0.992792792792793 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
32896093 32896093 PRJNA721440_S_NODE_15260_length_175_cov_2.365079_g15134_i0 PRJNA721440 15260 175 2.365079 4.13888825 Sporolactobacillus sp. STSJ-5 2965076 Bacteria Bacteria 41.6 0.0299   NR WP_255746576.1 2965076 g15134 i0 37.7 0.908571428571429 53 33 90.9 0 163 5 8 60 WP_255746576.1 hypothetical protein [Sporolactobacillus sp. STSJ-5] diamond 159 41.6 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Sporolactobacillaceae Sporolactobacillus Sporolactobacillus sp. STSJ-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;