RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA721440", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27178301 27178301 PRJNA721440_S_NODE_2722_length_341_cov_6.147260_g2596_i0 PRJNA721440 2722 341 6.14726 20.9621566 Syntrophaceae bacterium 2052184 Bacteria Bacteria 41.2 0.0427   NR MBP7232164.1 2052184 g2596 i0 37.5 0.49266862170088 56 35 49.3 0 213 46 4 59 MBP7232164.1 hypothetical protein [Syntrophaceae bacterium] diamond 168 41.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
28599712 28599712 PRJNA721440_S_NODE_7407_length_229_cov_0.866667_g7281_i0 PRJNA721440 7407 229 0.866667 1.98466743 Desulfobacterales bacterium 2044940 Bacteria Bacteria 75.9 3.14e-14   NR MCG8686114.1 2044940 g7281 i0 52 2.96069868995633 75 34 98.3 1 5 229 18 90 MCG8686114.1 oxidoreductase [Desulfobacterales bacterium] diamond 678 75.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
32875132 32875132 PRJNA721440_S_NODE_720_length_607_cov_4.659498_g607_i0 PRJNA721440 720 607 4.659498 28.28315286 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 172 1.97e-48   NR WP_014809794.1 2358 g607 i0 54.7 17.001647446458 150 62 74.1 2 605 156 224 367 WP_014809794.1 alkene reductase [Desulfomonile tiedjei] diamond 10320 172 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae Desulfomonile Desulfomonile tiedjei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;