RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA721440", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31948504 31948504 PRJNA721440_S_NODE_16917_length_169_cov_1.300000_g16791_i0 PRJNA721440 16917 169 1.3 2.197 Edaphobacter sp. 1934404 Bacteria Bacteria 45.8 0.00111   NR HTD95832.1 1934404 g16791 i0 68.8 1.13609467455621 32 7 56.8 1 68 163 5 33 HTD95832.1 NAD(P)-dependent oxidoreductase [Edaphobacter sp.] diamond 192 45.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter sp.
32233683 32233683 PRJNA721440_S_NODE_9278_length_210_cov_2.099379_g9152_i0 PRJNA721440 9278 210 2.099379 4.4086959 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 62.8 2.05e-9   NR HTS31103.1 2212468 g9152 i0 52.9 0.971428571428571 68 27 97.1 1 208 5 773 835 HTS31103.1 glycoside hydrolase family 3 C-terminal domain-containing protein [Bryobacteraceae bacterium] diamond 204 62.8 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
32360250 32360250 PRJNA721440_S_NODE_21159_length_156_cov_2.121495_g21033_i0 PRJNA721440 21159 156 2.121495 3.3095322 Candidatus Acidiferrum sp. 3069120 Bacteria Bacteria 69.7 3.42e-12   NR HVP07708.1 3069120 g21033 i0 64.7 0.980769230769231 51 18 98.1 0 154 2 549 599 HVP07708.1 S9 family peptidase [Candidatus Acidiferrum sp.] diamond 153 69.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales   Candidatus Acidiferrum Candidatus Acidiferrum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;