RNAquarium Metadata Server
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contig_metadata

16 rows where bioproject = "PRJNA721440", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 16 ✖

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA721440 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4538547 4538547 PRJNA721440_S_NODE_4304_length_282_cov_5.163090_g4178_i0 PRJNA721440 4304 282 5.16309 14.5599138 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 188 3.5399999999999984e-55   NR CDW86777.1 5949 g4178 i0 97.8 184.989361702128 93 2 98.9 0 281 3 77 169 CDW86777.1 UNKNOWN [Stylonychia lemnae] diamond 52167 188 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
22871154 22871154 PRJNA721440_S_NODE_7978_length_222_cov_3.225434_g7852_i0 PRJNA721440 7978 222 3.225434 7.16046348 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 111 3.2e-20   NTclustered gi|3366652|gb|AF031320.1|AF031320 5911 g7852 i0 89.655 0.783783783783784 87 9 39 0 133 219 1105 1019 Tetrahymena thermophila granule lattice protein 4 precursor (GRL4) mRNA, complete cds blastn 174 111 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
23663182 23663182 PRJNA721440_S_NODE_15579_length_174_cov_1.248000_g15453_i0 PRJNA721440 15579 174 1.248 2.17152 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 137 3.93e-28   NTclustered gi|829175019|ref|XM_001017812.3| 312017 g15453 i0 87.402 0.729885057471264 127 6 72 4 24 149 267 150 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 127 137 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
27178308 27178308 PRJNA721440_S_NODE_9822_length_206_cov_2.770701_g9696_i0 PRJNA721440 9822 206 2.770701 5.70764406 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 74.3 1.69e-13   NR KAL4465295.1 5901 g9696 i0 72.3 1.36893203883495 47 13 68.4 0 201 61 1115 1161 KAL4465295.1 hypothetical protein ABPG74_002009 [Tetrahymena malaccensis] diamond 282 74.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
28388910 28388910 PRJNA721440_S_NODE_19326_length_163_cov_1.728070_g19200_i0 PRJNA721440 19326 163 1.72807 2.8167541 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.04e-10   NR OMJ92653.1 5963 g19200 i0 81.3 1.80368098159509 32 3 53.4 1 1 87 101 132 OMJ92653.1 hypothetical protein SteCoe_4526 [Stentor coeruleus] diamond 294 62.8 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
29083732 29083732 PRJNA721440_S_NODE_17288_length_168_cov_1.394958_g17162_i0 PRJNA721440 17288 168 1.394958 2.34352944 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 85.9 4.6e-18   NR KAL4480407.1 5901 g17162 i0 73.2 3 56 15 100 0 168 1 156 211 KAL4480407.1 hypothetical protein ABPG74_020923 [Tetrahymena malaccensis] diamond 504 86.7 0.990772779700115 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
29357370 29357370 PRJNA721440_S_NODE_4269_length_283_cov_2.196581_g4143_i0 PRJNA721440 4269 283 2.196581 6.21632423 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.00259   NR OMJ84219.1 5963 g4143 i0 44.4 0.57243816254417 54 28 56.2 2 170 12 9 61 OMJ84219.1 hypothetical protein SteCoe_14706 [Stentor coeruleus] diamond 162 46.6 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
29546598 29546598 PRJNA721440_S_NODE_16110_length_172_cov_1.252033_g15984_i0 PRJNA721440 16110 172 1.252033 2.15349676 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 47 4.68e-4   NR CDW84271.1 5949 g15984 i0 62.9 1.02906976744186 35 13 61 0 148 44 298 332 CDW84271.1 ubiquitin carboxyl-terminal hydrolase 40 [Stylonychia lemnae] diamond 177 47 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29841407 29841407 PRJNA721440_S_NODE_12071_length_191_cov_1.345070_g11945_i0 PRJNA721440 12071 191 1.34507 2.5690837 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0098   NR KAL4464683.1 5901 g11945 i0 78.3 0.706806282722513 23 5 36.1 0 115 183 304 326 KAL4464683.1 hypothetical protein ABPG74_011244 [Tetrahymena malaccensis] diamond 135 43.5 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
30188807 30188807 PRJNA721440_S_NODE_6112_length_245_cov_6.316327_g5986_i0 PRJNA721440 6112 245 6.316327 15.47500115 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 72 1.85e-12   NR CDW86430.1 5949 g5986 i0 49.2 1.50612244897959 65 32 79.6 1 45 239 303 366 CDW86430.1 UNKNOWN [Stylonychia lemnae] diamond 369 72.4 0.994475138121547 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30305293 30305293 PRJNA721440_S_NODE_2812_length_336_cov_2.073171_g2686_i0 PRJNA721440 2812 336 2.073171 6.96585456 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 119 6.96e-30   NR XP_001023521.1 312017 g2686 i0 55 0.991071428571429 111 49 99.1 1 3 335 176 285 XP_001023521.1 poly (3-hydroxybutyrate) depolymerase [Tetrahymena thermophila SB210] diamond 333 119 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30494509 30494509 PRJNA721440_S_NODE_3313_length_313_cov_1.715909_g3187_i0 PRJNA721440 3313 313 1.715909 5.37079517 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 55.1 4.02e-6   NR CDW84185.1 5949 g3187 i0 35.1 0.900958466453674 94 58 90.1 1 285 4 281 371 CDW84185.1 ku p70 dna helicase [Stylonychia lemnae] diamond 282 55.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30557351 30557351 PRJNA721440_S_NODE_7393_length_229_cov_1.155556_g7267_i0 PRJNA721440 7393 229 1.155556 2.64622324 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 50.8 4.24e-5   NR XP_001022599.2 312017 g7267 i0 80 0.393013100436681 30 6 39.3 0 107 196 348 377 XP_001022599.2 granule lattice protein [Tetrahymena thermophila SB210] diamond 90 50.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
30936870 30936870 PRJNA721440_S_NODE_15494_length_174_cov_2.384000_g15368_i0 PRJNA721440 15494 174 2.384 4.14816 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 69.3 6.25e-12   NR CAG9316414.1 1481888 g15368 i0 66.7 3.27586206896552 48 16 82.8 0 171 28 287 334 CAG9316414.1 unnamed protein product [Blepharisma stoltei] diamond 570 69.3 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
31000006 31000006 PRJNA721440_S_NODE_19074_length_164_cov_0.904348_g18948_i0 PRJNA721440 19074 164 0.904348 1.48313072 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 85.9 7.97e-18   NR XP_001011873.1 312017 g18948 i0 60.7 1.11585365853659 61 17 98.8 2 162 1 675 735 XP_001011873.1 hypothetical protein TTHERM_00392970 [Tetrahymena thermophila SB210] diamond 183 85.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31136443 31136443 PRJNA721440_S_NODE_18055_length_166_cov_1.658120_g17929_i0 PRJNA721440 18055 166 1.65812 2.7524792 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.4 5.05e-6   NR CDW80950.1 5949 g17929 i0 47.1 2.76506024096386 51 27 92.2 0 3 155 481 531 CDW80950.1 abc transporter family protein [Stylonychia lemnae] diamond 459 52.8 0.992424242424242 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;