RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA721440", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA721440 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26988566 26988566 PRJNA721440_S_NODE_15022_length_176_cov_2.291339_g14896_i0 PRJNA721440 15022 176 2.291339 4.03275664 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 44.3 0.00433   NR XP_004338987.1 1257118 g14896 i0 47.4 6.83522727272727 57 22 97.2 2 176 6 208 256 XP_004338987.1 uncharacterized protein ACA1_128810 [Acanthamoeba castellanii str. Neff] diamond 1203 44.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29862498 29862498 PRJNA721440_S_NODE_19811_length_162_cov_1.292035_g19685_i0 PRJNA721440 19811 162 1.292035 2.0930967 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 82.8 6.34e-17   NR XP_004352082.1 1257118 g19685 i0 75 3.87037037037037 52 13 96.3 0 161 6 165 216 XP_004352082.1 Centractin, putative [Acanthamoeba castellanii str. Neff] diamond 627 82.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31252733 31252733 PRJNA721440_S_NODE_12355_length_189_cov_2.700000_g12229_i0 PRJNA721440 12355 189 2.7 5.103 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 101 1.5699999999999994e-23   NR XP_004358271.1 1257118 g12229 i0 79.3 2.79365079365079 58 12 92.1 0 176 3 326 383 XP_004358271.1 fumarylacetoacetase [Acanthamoeba castellanii str. Neff] diamond 528 101 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;