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contig_metadata

24 rows where bioproject = "PRJNA720429" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA720429 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3261285 3261285 PRJNA720429_P_NODE_3403_length_250_cov_0.870056_g3346_i0 PRJNA720429 3403 250 0.870056 2.17514 Setaria viridis 4556 Plants Plants 462 8.83e-126   NTclustered gi|1845105321|ref|XM_034729552.1| 4556 g3346 i0 100 75.672 250 0 100 0 1 250 769 1018 PREDICTED: Setaria viridis calcium-dependent protein kinase 4 (LOC117848212), transcript variant X2, mRNA blastn 18918 462 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Setaria Setaria viridis
4538366 4538366 PRJNA720429_P_NODE_1924_length_306_cov_2.643777_g1867_i0 PRJNA720429 1924 306 2.643777 8.08995762 Phyllostachys edulis 38705 Plants Plants 566 8.239999999999998e-157   NTclustered gi|242387325|emb|FP099531.1| 38705 g1867 i0 100 2.89542483660131 306 0 100 0 1 306 332 27 Phyllostachys edulis cDNA clone: bphyem109b08, full insert sequence blastn 886 566 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
5021860 5021860 PRJNA720429_P_NODE_4104_length_246_cov_2.196532_g4047_i0 PRJNA720429 4104 246 2.196532 5.40346872 Magnoliopsida 3398 Plants Plants 416 6.839999999999999e-112   NTclustered gi|19919546|gb|AF479105.1| 16719 g4047 i0 97.166 100.394308943089 247 6 100 1 1 246 91 337 Juglans nigra 26S ribosomal RNA gene, complete sequence blastn 24697 416 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Juglandaceae Juglans Juglans nigra
7571372 7571372 PRJNA720429_P_NODE_2866_length_262_cov_2.243386_g2809_i0 PRJNA720429 2866 262 2.243386 5.87767132 Citrus 2706 Plants Plants 484 1.99e-132   NTclustered gi|2249528609|gb|ON685430.1| 2711 g2809 i0 100 100.045801526718 262 0 100 0 1 262 2871 2610 Citrus sinensis isolate BPTPS119 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 26212 484 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
8363293 8363293 PRJNA720429_P_NODE_1607_length_331_cov_1.790698_g1550_i0 PRJNA720429 1607 331 1.790698 5.92721038 Dioscorea cayenensis 29710 Plants Plants 612 1.14e-170   NTclustered gi|1221815300|dbj|LC219380.1| 55577 g1550 i0 100 1.57099697885196 331 0 100 0 1 331 7995 8325 Dioscorea rotundata mitochondrial DNA, contig: TDr_Mt_scaffold7_size10194, cultivar: TDr96_F1 blastn 520 612 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dioscoreales Dioscoreaceae Dioscorea Dioscorea cayenensis
10914047 10914047 PRJNA720429_P_NODE_69_length_1407_cov_2.119190_g47_i0 PRJNA720429 69 1407 2.11919 29.8170033 Phyllostachys edulis 38705 Plants Plants 2593 0   NTclustered gi|242386712|emb|FP099117.1| 38705 g47 i0 99.929 60.6396588486141 1407 1 100 0 1 1407 22 1428 Phyllostachys edulis cDNA clone: bphyem207e20, full insert sequence blastn 85320 2593 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Phyllostachys Phyllostachys edulis
13463777 13463777 PRJNA720429_P_NODE_4471_length_244_cov_1.350877_g4414_i0 PRJNA720429 4471 244 1.350877 3.29613988 Brassica rapa 3711 Plants Plants 180 9.68e-41   NTclustered gi|1516534800|emb|LR031575.1| 3711 g4414 i0 83.42 83.4426229508197 193 32 79 0 1 193 23833410 23833218 Brassica rapa genome, scaffold: A08 blastn 20360 180 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
13947407 13947407 PRJNA720429_P_NODE_3731_length_248_cov_0.880000_g3674_i0 PRJNA720429 3731 248 0.88 2.1824 Solanum 4107 Plants Plants 442 1.1399999999999995e-119   NTclustered gi|568215726|ref|NM_001288219.1| 4113 g3674 i0 98.79 72.9354838709677 248 3 100 0 1 248 612 859 Solanum tuberosum 40S ribosomal protein S4 (RPS4), mRNA blastn 18088 442 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum tuberosum
14739031 14739031 PRJNA720429_P_NODE_4232_length_246_cov_0.890173_g4175_i0 PRJNA720429 4232 246 0.890173 2.18982558 Setaria viridis 4556 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|1845159126|ref|XM_034745779.1| 4556 g4175 i0 100 32.6382113821138 246 0 100 0 1 246 72 317 PREDICTED: Setaria viridis NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (LOC117862243), mRNA blastn 8029 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Setaria Setaria viridis
16012537 16012537 PRJNA720429_P_NODE_4093_length_247_cov_0.885057_g4036_i0 PRJNA720429 4093 247 0.885057 2.18609079 Triticum aestivum 4565 Plants Plants 193 1.26e-44   NTclustered gi|2123865390|ref|XR_006458989.1| 4565 g4036 i0 93.798 5.22267206477733 129 7 52 1 3 131 2958 2831 PREDICTED: Triticum aestivum uncharacterized LOC123119839 (LOC123119839), transcript variant X1, ncRNA blastn 1290 193 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
16012539 16012539 PRJNA720429_P_NODE_4193_length_246_cov_0.890173_g4136_i0 PRJNA720429 4193 246 0.890173 2.18982558 Solanum tuberosum 4113 Plants Plants 449 6.74e-122   NTclustered gi|971584905|ref|XM_015304891.1| 4113 g4136 i0 99.593 39.8130081300813 246 1 100 0 1 246 3206 2961 PREDICTED: Solanum tuberosum putative pentatricopeptide repeat-containing protein At1g19290 (LOC102593990), transcript variant X3, mRNA blastn 9794 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum tuberosum
16496500 16496500 PRJNA720429_P_NODE_2933_length_260_cov_1.598930_g2876_i0 PRJNA720429 2933 260 1.59893 4.157218 Rutaceae 23513 Plants Plants 481 2.55e-131   NTclustered gi|1381390543|ref|NC_037463.1| 2711 g2876 i0 100 13.1961538461538 260 0 100 0 1 260 604245 604504 Citrus sinensis mitochondrion, complete genome blastn 3431 481 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
16496517 16496517 PRJNA720429_P_NODE_4893_length_242_cov_0.911243_g4836_i0 PRJNA720429 4893 242 0.911243 2.20520806 Glycine 3846 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|2027470478|ref|XM_003527819.5| 3847 g4836 i0 100 2.40082644628099 242 0 100 0 1 242 2087 1846 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At5g18475 (LOC100790966), mRNA blastn 581 448 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
17288009 17288009 PRJNA720429_P_NODE_1934_length_306_cov_1.257511_g1877_i0 PRJNA720429 1934 306 1.257511 3.84798366 Dioscorea cayenensis 29710 Plants Plants 555 1.7799999999999996e-153   NTclustered gi|1221815300|dbj|LC219380.1| 55577 g1877 i0 99.346 1 306 2 100 0 1 306 7250 6945 Dioscorea rotundata mitochondrial DNA, contig: TDr_Mt_scaffold7_size10194, cultivar: TDr96_F1 blastn 306 555 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Dioscoreales Dioscoreaceae Dioscorea Dioscorea cayenensis
22387436 22387436 PRJNA720429_P_NODE_4338_length_245_cov_0.895349_g4281_i0 PRJNA720429 4338 245 0.895349 2.19360505 Pyrus communis 23211 Plants Plants 298 2.57e-76   NTclustered gi|2806165835|ref|XR_011065932.1| 23211 g4281 i0 93.532 10.7918367346939 201 11 82 2 45 245 242 440 PREDICTED: Pyrus communis uncharacterized lncRNA (LOC137718819), ncRNA blastn 2644 298 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Pyrus Pyrus communis
22387444 22387444 PRJNA720429_P_NODE_4718_length_243_cov_0.905882_g4661_i0 PRJNA720429 4718 243 0.905882 2.20129326 Vitis vinifera 29760 Plants Plants 52.8 0.022   NTclustered gi|123679770|emb|AM482650.1| 29760 g4661 i0 100 0.11522633744856 28 0 12 0 85 112 803 776 Vitis vinifera, whole genome shotgun sequence, contig VV78X188472.8, clone ENTAV 115 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Vitales Vitaceae Vitis Vitis vinifera
23663039 23663039 PRJNA720429_P_NODE_3259_length_251_cov_0.865169_g3202_i0 PRJNA720429 3259 251 0.865169 2.17157419 Triticum aestivum 4565 Plants Plants 351 2e-92   NTclustered gi|1282798539|gb|MG560142.1| 4565 g3202 i0 91.765 114.215139442231 255 17 100 2 1 251 1732818 1732564 Triticum aestivum omega gliadin-D1, omega gliadin-D2, omega gliadin-D3, gamma gliadin-D1, delta gliadin-D1, gamma gliadin-D2, gamma gliadin-D3, gamma gliadin-D4, LMW-D1, LMW-D2, LMW-D3, LMW-D6, and LMW-D7 genes, complete cds blastn 28668 351 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
23663060 23663060 PRJNA720429_P_NODE_4679_length_243_cov_0.905882_g4622_i0 PRJNA720429 4679 243 0.905882 2.20129326 Chenopodium quinoa 63459 Plants Plants 250 7.2399999999999995e-62   NTclustered gi|1219042551|ref|XM_021900914.1| 63459 g4622 i0 90.104 66.5843621399177 192 19 79 0 1 192 416 225 PREDICTED: Chenopodium quinoa probable 6-phosphogluconolactonase 2 (LOC110721720), transcript variant X1, mRNA blastn 16180 250 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Chenopodium Chenopodium quinoa
23663065 23663065 PRJNA720429_P_NODE_5039_length_241_cov_0.916667_g4982_i0 PRJNA720429 5039 241 0.916667 2.20916747 Hordeum vulgare 4513 Plants Plants 161 3.45e-35   NTclustered gi|326497356|dbj|AK371065.1| 112509 g4982 i0 80.269 0.925311203319502 223 36 91 6 3 221 778 996 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 223 161 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
25420112 25420112 PRJNA720429_P_NODE_3320_length_251_cov_0.865169_g3263_i0 PRJNA720429 3320 251 0.865169 2.17157419 Streptophyta 35493 Plants Plants 119 1.33e-29   NR KAH0638085.1 4113 g3263 i0 73.2 17.5577689243028 82 22 98 0 5 250 13 94 KAH0638085.1 hypothetical protein KY289_038000 [Solanum tuberosum] diamond 4407 119 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum tuberosum
27968012 27968012 PRJNA720429_P_NODE_3445_length_250_cov_0.870056_g3388_i0 PRJNA720429 3445 250 0.870056 2.17514 Chenopodium quinoa 63459 Plants Plants 160 5.0599999999999997e-48   NR XP_021734605.1 63459 g3388 i0 83.1 0.996 83 14 99.6 0 1 249 72 154 XP_021734605.1 small heat shock protein, chloroplastic-like [Chenopodium quinoa] diamond 249 160 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Chenopodium Chenopodium quinoa
29672715 29672715 PRJNA720429_P_NODE_4570_length_244_cov_0.900585_g4513_i0 PRJNA720429 4570 244 0.900585 2.1974274 Bienertia sinuspersici 338654 Plants Plants 114 1.6e-30   NR KAL2894182.1 338654 g4513 i0 82 0.75 61 11 75 0 60 242 1 61 KAL2894182.1 Basic blue protein [Bienertia sinuspersici] diamond 183 114 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Caryophyllales Chenopodiaceae Bienertia Bienertia sinuspersici
30115158 30115158 PRJNA720429_P_NODE_4952_length_242_cov_0.911243_g4895_i0 PRJNA720429 4952 242 0.911243 2.20520806 Citrus sinensis 2711 Plants Plants 156 1.56e-42   NR KAH9698093.1 2711 g4895 i0 100 0.991735537190083 80 0 99.2 0 2 241 123 202 KAH9698093.1 hypothetical protein KPL71_023880 [Citrus sinensis] diamond 240 156 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
30873532 30873532 PRJNA720429_P_NODE_4174_length_246_cov_0.890173_g4117_i0 PRJNA720429 4174 246 0.890173 2.18982558 Camellia sinensis var. sinensis 542762 Plants Plants 78.2 7.73e-15   NR GMP68312.1 542762 g4117 i0 65.1 0.768292682926829 63 21 75.6 1 7 192 37 99 GMP68312.1 hypothetical protein CsSME_00027961 [Camellia sinensis var. sinensis] diamond 189 78.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Theaceae Camellia Camellia sinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;