RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA720429" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA720429 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3261304 3261304 PRJNA720429_P_NODE_4643_length_243_cov_1.323529_g4586_i0 PRJNA720429 4643 243 1.323529 3.21617547 Labilithrix luteola 1391654 Bacteria Bacteria 246 9.36e-61   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4586 i0 85.593 1.93415637860082 236 32 97 2 1 235 10989353 10989587 Labilithrix luteola strain DSM 27648, complete genome blastn 470 246 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
24936568 24936568 PRJNA720429_P_NODE_4600_length_244_cov_0.900585_g4543_i0 PRJNA720429 4600 244 0.900585 2.1974274 Labilithrix sp. 1971228 Bacteria Bacteria 57.8 1.81e-7   NR MDB4941886.1 1971228 g4543 i0 78.4 0.454918032786885 37 8 45.5 0 113 3 1 37 MDB4941886.1 Heavy metal efflux outer membrane protein CzcC family [Labilithrix sp.] diamond 111 57.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
27747250 27747250 PRJNA720429_P_NODE_4024_length_247_cov_0.885057_g3967_i0 PRJNA720429 4024 247 0.885057 2.18609079 Myxococcales bacterium 2026763 Bacteria Bacteria 58.9 7.59e-8   NR HWT85395.1 2026763 g3967 i0 41.9 1.80971659919028 74 43 89.9 0 2 223 52 125 HWT85395.1 HupE/UreJ family protein [Myxococcales bacterium] diamond 447 58.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28346915 28346915 PRJNA720429_P_NODE_4966_length_242_cov_0.911243_g4909_i0 PRJNA720429 4966 242 0.911243 2.20520806 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 89.7 1.05e-18   NR MBS2011269.1 2026735 g4909 i0 60 0.991735537190083 80 27 99.2 1 242 3 533 607 MBS2011269.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 240 89.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28757319 28757319 PRJNA720429_P_NODE_4967_length_242_cov_0.899408_g4910_i0 PRJNA720429 4967 242 0.899408 2.17656736 Myxococcota bacterium 2818507 Bacteria Bacteria 84.7 8.44e-18   NR MEM9066982.1 2818507 g4910 i0 46.8 0.979338842975207 79 42 97.9 0 6 242 38 116 MEM9066982.1 transglutaminase-like domain-containing protein [Myxococcota bacterium] diamond 237 84.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29073326 29073326 PRJNA720429_P_NODE_3048_length_256_cov_1.683060_g2991_i0 PRJNA720429 3048 256 1.68306 4.3086336 Labilithrix sp. 1971228 Bacteria Bacteria 167 7.11e-46   NR MDB4940782.1 1971228 g2991 i0 95.3 0.99609375 85 4 99.6 0 256 2 293 377 MDB4940782.1 Translation initiation factor 2 [Labilithrix sp.] diamond 255 167 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29104870 29104870 PRJNA720429_P_NODE_4768_length_243_cov_0.905882_g4711_i0 PRJNA720429 4768 243 0.905882 2.20129326 Labilithrix sp. 1971228 Bacteria Bacteria 94 5.46e-22   NR MDB4944464.1 1971228 g4711 i0 63.3 0.975308641975309 79 28 97.5 1 242 6 57 134 MDB4944464.1 hypothetical protein [Labilithrix sp.] diamond 237 94 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29294152 29294152 PRJNA720429_P_NODE_3809_length_248_cov_0.880000_g3752_i0 PRJNA720429 3809 248 0.88 2.1824 Nannocystis radixulma 2995305 Bacteria Bacteria 60.1 1.66e-8   NR WP_271998473.1 2995305 g3752 i0 49.3 0.883064516129032 73 37 88.3 0 28 246 65 137 WP_271998473.1 hypothetical protein [Nannocystis radixulma] diamond 219 60.1 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis radixulma
29609554 29609554 PRJNA720429_P_NODE_4990_length_241_cov_1.452381_g4933_i0 PRJNA720429 4990 241 1.452381 3.50023821 Labilithrix sp. 1971228 Bacteria Bacteria 83.2 6.69e-18   NR MDB4944294.1 1971228 g4933 i0 74.5 0.634854771784232 51 13 63.5 0 157 5 54 104 MDB4944294.1 hypothetical protein [Labilithrix sp.] diamond 153 83.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
32233670 32233670 PRJNA720429_P_NODE_3298_length_251_cov_0.865169_g3241_i0 PRJNA720429 3298 251 0.865169 2.17157419 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84 1.31e-16   NR MBI2392472.1 2026735 g3241 i0 48.2 0.99203187250996006 83 43 99.2 0 2 250 1414 1496 MBI2392472.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 249 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;