RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA720429" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA720429 · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8363315 8363315 PRJNA720429_P_NODE_3727_length_248_cov_1.320000_g3670_i0 PRJNA720429 3727 248 1.32 3.2736 Bacteriovorax stolpii 960 Bacteria Bacteria 189 1.6399999999999996e-43   NTclustered gi|1700689994|gb|CP030035.1| 960 g3670 i0 80.709 2 254 40 100 6 1 248 463786 463536 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 496 189 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
26767199 26767199 PRJNA720429_P_NODE_4161_length_246_cov_0.890173_g4104_i0 PRJNA720429 4161 246 0.890173 2.18982558 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 114 1.51e-28   NR MBX9702590.1 2654442 g4104 i0 89.7 0.707317073170732 58 6 70.7 0 71 244 164 221 MBX9702590.1 serine/threonine-protein kinase [Silvanigrellaceae bacterium] diamond 174 114 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
26809420 26809420 PRJNA720429_P_NODE_3081_length_255_cov_1.307692_g3024_i0 PRJNA720429 3081 255 1.307692 3.3346146 Pseudomonadati 3379134 Bacteria Bacteria 66.2 2.19e-10   NR MEZ0391224.1 2026715 g3024 i0 87.1 3.17647058823529 31 4 36.5 0 3 95 460 490 MEZ0391224.1 TldD/PmbA family protein [Pseudobdellovibrionaceae bacterium] diamond 810 66.6 0.993993993993994 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
27336655 27336655 PRJNA720429_P_NODE_2103_length_293_cov_1.931818_g2046_i0 PRJNA720429 2103 293 1.931818 5.66022674 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 89.4 2.89e-18   NR HLW56653.1 2081706 g2046 i0 62.3 1.57679180887372 77 27 78.8 2 292 62 769 843 HLW56653.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 462 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29168076 29168076 PRJNA720429_P_NODE_3709_length_248_cov_1.760000_g3652_i0 PRJNA720429 3709 248 1.76 4.3648 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 92.4 1.31e-19   NR HXH30291.1 2081706 g3652 i0 80.4 1.34274193548387 56 11 67.7 0 247 80 843 898 HXH30291.1 aconitate hydratase AcnA [Bacteriovoracaceae bacterium] diamond 333 92.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29641122 29641122 PRJNA720429_P_NODE_3410_length_250_cov_0.870056_g3353_i0 PRJNA720429 3410 250 0.870056 2.17514 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 120 1.73e-30   NR WP_413291217.1 3394358 g3353 i0 70.4 0.972 81 24 97.2 0 248 6 37 117 WP_413291217.1 type II secretion system protein J [Bdellovibrio sp. HCB337] diamond 243 120 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
30905239 30905239 PRJNA720429_P_NODE_4194_length_246_cov_0.890173_g4137_i0 PRJNA720429 4194 246 0.890173 2.18982558 Bacteriovorax stolpii 960 Bacteria Bacteria 134 1.68e-34   NR WP_142408984.1 960 g4137 i0 91.4 0.98780487804878 81 7 98.8 0 244 2 197 277 WP_142408984.1 endopeptidase La [Bacteriovorax stolpii] diamond 243 134 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
32328662 32328662 PRJNA720429_P_NODE_2639_length_271_cov_1.555556_g2582_i0 PRJNA720429 2639 271 1.555556 4.21555676 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 171 4.52e-48   NR HLT22320.1 2081706 g2582 i0 88.9 0.996309963099631 90 10 99.6 0 1 270 334 423 HLT22320.1 phospho-sugar mutase [Bacteriovoracaceae bacterium] diamond 270 171 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32812157 32812157 PRJNA720429_P_NODE_4120_length_246_cov_1.531792_g4063_i0 PRJNA720429 4120 246 1.531792 3.76820832 Bdellovibrio 958 Bacteria Bacteria 131 2.58e-33   NR WP_347358685.1 958 g4063 i0 74.4 5 82 21 100 0 246 1 454 535 WP_347358685.1 MULTISPECIES: cytochrome-c oxidase, cbb3-type subunit I [Bdellovibrio] diamond 1230 131 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;