RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA720429", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA720429 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3261303 3261303 PRJNA720429_P_NODE_4523_length_244_cov_0.900585_g4466_i0 PRJNA720429 4523 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 154 7.83e-44   NR HBR58027.1 2052146 g4466 i0 88.9 6.97131147540984 81 9 99.6 0 243 1 180 260 HBR58027.1 3-oxoacyl-ACP synthase [Blastocatellia bacterium] diamond 1701 155 0.993548387096774 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
8363324 8363324 PRJNA720429_P_NODE_4767_length_243_cov_0.905882_g4710_i0 PRJNA720429 4767 243 0.905882 2.20129326 Acidobacteriaceae bacterium 2052142 Bacteria Bacteria 126 2.8199999999999996e-32   NR MBV8071908.1 2052142 g4710 i0 79.5 0.901234567901235 73 15 90.1 0 219 1 182 254 MBV8071908.1 transposase [Acidobacteriaceae bacterium] diamond 219 126 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   Acidobacteriaceae bacterium
32138493 32138493 PRJNA720429_P_NODE_3498_length_250_cov_0.870056_g3441_i0 PRJNA720429 3498 250 0.870056 2.17514 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 156 3.2299999999999998e-43   NR HXH71100.1 2283092 g3441 i0 91.6 0.996 83 7 99.6 0 1 249 201 283 HXH71100.1 mechanosensitive ion channel family protein [Pyrinomonadaceae bacterium] diamond 249 156 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32738956 32738956 PRJNA720429_P_NODE_2260_length_286_cov_1.220657_g2203_i0 PRJNA720429 2260 286 1.220657 3.49107902 Candidatus Acidiferrales bacterium 2952895 Bacteria Bacteria 43.5 0.0334   NR HEV2386253.1 2952895 g2203 i0 30.5 0.618881118881119 59 41 61.9 0 230 54 982 1040 HEV2386253.1 nitrate reductase subunit alpha [Candidatus Acidiferrales bacterium] diamond 177 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Candidatus Acidiferrales     Candidatus Acidiferrales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;