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contig_metadata

6 rows where bioproject = "PRJNA720429", tax_kingdom = "Metazoa" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA720429 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2468904 2468904 PRJNA720429_P_NODE_402_length_635_cov_2.389680_g348_i0 PRJNA720429 402 635 2.38968 15.174468 Sus scrofa 9823 Chordata Chordata 377 8.42e-127   NR XP_020938199.1 9823 g348 i0 100 1.75748031496063 186 0 87.9 0 76 633 65 250 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 1116 377 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
5813586 5813586 PRJNA720429_P_NODE_4965_length_242_cov_0.911243_g4908_i0 PRJNA720429 4965 242 0.911243 2.20520806 Motacilla alba 45807 Chordata Chordata 67.6 7.78e-7   NTclustered gi|1942966184|ref|XM_038160168.1| 1094192 g4908 i0 97.436 2.51239669421488 39 1 16 0 143 181 5884 5922 PREDICTED: Motacilla alba alba uncharacterized LOC119710769 (LOC119710769), mRNA blastn 608 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Motacillidae Motacilla Motacilla alba
12189297 12189297 PRJNA720429_P_NODE_3370_length_250_cov_0.870056_g3313_i0 PRJNA720429 3370 250 0.870056 2.17514 Mus musculus 10090 Chordata Chordata 462 8.83e-126   NTclustered gi|347582638|ref|NM_198017.3| 10090 g3313 i0 100 70.424 250 0 100 0 1 250 2019 1770 Mus musculus BRISC complex subunit (Abraxas2), mRNA blastn 17606 462 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22871088 22871088 PRJNA720429_P_NODE_4358_length_245_cov_0.895349_g4301_i0 PRJNA720429 4358 245 0.895349 2.19360505 Chordata 7711 Chordata Chordata 132 2.76e-26   NTclustered gi|2851903700|ref|XM_069746567.1| 111125 g4301 i0 88.785 2.85714285714286 107 12 44 0 132 238 3240 3134 PREDICTED: Ranitomeya imitator uncharacterized protein (LOC138661703), transcript variant X3, mRNA blastn 700 132 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
23663062 23663062 PRJNA720429_P_NODE_4839_length_242_cov_0.911243_g4782_i0 PRJNA720429 4839 242 0.911243 2.20520806 Sus scrofa 9823 Chordata Chordata 442 1.1099999999999995e-119   NTclustered gi|76360109|emb|CT009566.5| 9823 g4782 i0 99.588 15.6942148760331 243 0 100 1 1 242 54801 54559 Pig DNA sequence from clone CH242-258I7 on chromosome 17, complete sequence blastn 3798 442 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
24936563 24936563 PRJNA720429_P_NODE_4220_length_246_cov_0.890173_g4163_i0 PRJNA720429 4220 246 0.890173 2.18982558 Mus musculus 10090 Chordata Chordata 449 6.74e-122   NTclustered gi|354794336|gb|JN958837.1| 10090 g4163 i0 99.593 3.45121951219512 246 1 100 0 1 246 5945 5700 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele BC013712:tm1a(KOMP)Wtsi; transgenic blastn 849 449 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;