RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA720429", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 7 ✖

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA720429 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
709999 709999 PRJNA720429_P_NODE_5081_length_241_cov_0.916667_g5024_i0 PRJNA720429 5081 241 0.916667 2.20916747 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 346 8.89e-91   NTclustered gi|290985904|ref|XM_002675619.1| 5762 g5024 i0 92.531 1.9792531120332 241 18 100 0 1 241 49 289 Naegleria gruberi ribosomal protein S13 (NAEGRDRAFT_82651), mRNA blastn 477 346 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
1986051 1986051 PRJNA720429_P_NODE_4702_length_243_cov_0.905882_g4645_i0 PRJNA720429 4702 243 0.905882 2.20129326 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 377 3.18e-100   NTclustered gi|290998600|ref|XM_002681823.1| 5762 g4645 i0 94.65 4.60905349794239 243 13 100 0 1 243 417 175 Naegleria gruberi Glu/Leu/Phe/Val dehydrogenase (NAEGRDRAFT_37816), mRNA blastn 1120 377 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
3261288 3261288 PRJNA720429_P_NODE_3643_length_249_cov_0.875000_g3586_i0 PRJNA720429 3643 249 0.875 2.17875 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 316 7.239999999999998e-82   NTclustered gi|290974137|ref|XM_002669757.1| 5762 g3586 i0 89.837 0.987951807228916 246 25 99 0 4 249 286 41 Naegleria gruberi fibronectin, type-like protein (NAEGRDRAFT_59850), partial mRNA blastn 246 316 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
3261305 3261305 PRJNA720429_P_NODE_4743_length_243_cov_0.905882_g4686_i0 PRJNA720429 4743 243 0.905882 2.20129326 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 333 6.989999999999999e-87   NTclustered gi|290976367|ref|XM_002670866.1| 5762 g4686 i0 91.358 7.74485596707819 243 21 100 0 1 243 579 821 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55906), mRNA blastn 1882 333 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
9638457 9638457 PRJNA720429_P_NODE_1648_length_328_cov_1.556863_g1591_i0 PRJNA720429 1648 328 1.556863 5.10651064 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 527 4.209999999999999e-145   NTclustered gi|290981023|ref|XM_002673185.1| 5762 g1591 i0 96.262 3.96036585365854 321 12 98 0 1 321 337 17 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_59029), mRNA blastn 1299 527 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
14739015 14739015 PRJNA720429_P_NODE_3432_length_250_cov_0.870056_g3375_i0 PRJNA720429 3432 250 0.870056 2.17514 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 313 9.41e-81   NTclustered gi|291000055|ref|XM_002682549.1| 5762 g3375 i0 94.554 0.808 202 11 81 0 1 202 889 1090 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_45345), partial mRNA blastn 202 313 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19836936 19836936 PRJNA720429_P_NODE_4916_length_242_cov_0.911243_g4859_i0 PRJNA720429 4916 242 0.911243 2.20520806 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 425 1.11e-114   NTclustered gi|291000501|ref|XM_002682772.1| 5762 g4859 i0 98.347 1 242 4 100 0 1 242 304 63 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_2668), partial mRNA blastn 242 425 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;