RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA719595" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA719595 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
709412 709412 PRJNA719595_P_NODE_6501_length_253_cov_0.866667_g6466_i0 PRJNA719595 6501 253 0.866667 2.19266751 Cairina moschata 8855 Chordata Chordata 52.8 0.023   NTclustered gi|2921976553|gb|CP130424.1| 8855 g6466 i0 100 0.110671936758893 28 0 11 0 144 171 12679301 12679328 Cairina moschata breed yongchun chromosome 9 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
3260795 3260795 PRJNA719595_P_NODE_8403_length_246_cov_0.901734_g8368_i0 PRJNA719595 8403 246 0.901734 2.21826564 Eleutherodactylus coqui 57060 Chordata Chordata 54.7 0.006   NTclustered gi|2775477343|ref|XM_066601717.1| 57060 g8368 i0 96.875 0.390243902439024 32 1 13 0 135 166 6694 6663 PREDICTED: Eleutherodactylus coqui uncharacterized protein (LOC136626704), mRNA blastn 96 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
7571198 7571198 PRJNA719595_P_NODE_2846_length_363_cov_1.065517_g2811_i0 PRJNA719595 2846 363 1.065517 3.86782671 Metazoa 33208 Chordata Chordata 56.5 0.003   NTclustered gi|2917686261|emb|OZ228790.1| 37598 g2811 i0 100 1.14876033057851 30 0 8 0 232 261 4231920 4231949 Fringilla coelebs genome assembly, chromosome: 11 blastn 417 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
21595583 21595583 PRJNA719595_P_NODE_6497_length_253_cov_0.866667_g6462_i0 PRJNA719595 6497 253 0.866667 2.19266751 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.023   NTclustered gi|2917587946|emb|OZ228645.1| 50251 g6462 i0 100 0.442687747035573 28 0 11 0 226 253 43382 43355 Sitta europaea genome assembly, chromosome: 24 blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
22386939 22386939 PRJNA719595_P_NODE_8738_length_245_cov_0.906977_g8703_i0 PRJNA719595 8738 245 0.906977 2.22209365 Mus musculus 10090 Chordata Chordata 451 1.87e-122   NTclustered gi|1145991164|ref|NM_009155.4| 10090 g8703 i0 100 94.9591836734694 244 0 99 0 1 244 332 575 Mus musculus selenoprotein P (Selenop), transcript variant 1, mRNA blastn 23265 451 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27020402 27020402 PRJNA719595_P_NODE_4762_length_292_cov_1.068493_g4727_i0 PRJNA719595 4762 292 1.068493 3.11999956 Ranitomeya imitator 111125 Chordata Chordata 70.1 1.45e-11   NR CAJ0964204.1 111125 g4727 i0 73 1.15068493150685 37 10 38 0 150 40 15 51 CAJ0964204.1 unnamed protein product [Ranitomeya imitator] diamond 336 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;