RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA719595", tax_kingdom = "Viridiplantae" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

  • Viridiplantae · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA719595 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21112099 21112099 PRJNA719595_P_NODE_9077_length_243_cov_0.917647_g9042_i0 PRJNA719595 9077 243 0.917647 2.22988221 Micromonas commoda 296587 Plants Plants 97.1 9.98e-16   NTclustered gi|255078913|ref|XM_002502991.1| 296587 g9042 i0 82.727 19.6049382716049 110 17 45 2 124 232 65 173 Micromonas commoda predicted protein mRNA blastn 4764 97.1 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
28062678 28062678 PRJNA719595_P_NODE_6805_length_252_cov_0.871508_g6770_i0 PRJNA719595 6805 252 0.871508 2.19620016 Cymbomonas tetramitiformis 36881 Plants Plants 57.8 1.95e-7   NR KAK3261571.1 36881 g6770 i0 39.1 0.761904761904762 64 38 75 1 203 15 26 89 KAK3261571.1 hypothetical protein CYMTET_29525 [Cymbomonas tetramitiformis] diamond 192 57.8 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis
29357346 29357346 PRJNA719595_P_NODE_7349_length_250_cov_0.881356_g7314_i0 PRJNA719595 7349 250 0.881356 2.20339 Raphidocelis subcapitata 307507 Plants Plants 117 3.0899999999999993e-31   NR GBF93448.1 307507 g7314 i0 68.3 0.984 82 26 98.4 0 5 250 36 117 GBF93448.1 ribosomal protein S1 [Raphidocelis subcapitata] diamond 246 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Raphidocelis Raphidocelis subcapitata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;