RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA719595", tax_kingdom = "Fungi" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA719595 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10913502 10913502 PRJNA719595_P_NODE_8489_length_246_cov_0.901734_g8454_i0 PRJNA719595 8489 246 0.901734 2.21826564 Cryptococcus amylolentus 104669 Fungi Fungi 178 3.5099999999999993e-40   NTclustered gi|1101782768|ref|XM_019134367.1| 1295533 g8454 i0 84.043 24.1585365853659 188 26 76 3 1 186 1518 1703 Cryptococcus amylolentus CBS 6039 ATP-dependent RNA helicase ded1 (L202_01067), mRNA blastn 5943 178 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus amylolentus
20319808 20319808 PRJNA719595_P_NODE_8476_length_246_cov_0.901734_g8441_i0 PRJNA719595 8476 246 0.901734 2.21826564 Agaricomycetes 155619 Fungi Fungi 161 8.99e-44   NR KAH8120070.1 127956 g8441 i0 94.9 19.9878048780488 78 4 95.1 0 246 13 953 1030 KAH8120070.1 P-loop containing nucleoside triphosphate hydrolase protein [Phellopilus nigrolimitatus] diamond 4917 162 0.993827160493827 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Hymenochaetales Hymenochaetaceae Phellopilus Phellopilus nigrolimitatus
26777815 26777815 PRJNA719595_P_NODE_9421_length_242_cov_0.923077_g9386_i0 PRJNA719595 9421 242 0.923077 2.23384634 Polyporales 5303 Fungi Fungi 80.1 2.64e-16   NR XP_047892774.1 139415 g9386 i0 51.3 3.96694214876033 80 38 99.2 1 240 1 101 179 XP_047892774.1 40S ribosomal protein S8 [Fomitopsis serialis] diamond 960 80.9 0.990111248454882 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Fomitopsidaceae Fomitopsis Fomitopsis serialis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;