RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA719595", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA719595 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27525987 27525987 PRJNA719595_P_NODE_8703_length_245_cov_0.906977_g8668_i0 PRJNA719595 8703 245 0.906977 2.22209365 Armatimonadota bacterium 2033014 Bacteria Bacteria 107 1.53e-25   NR MDQ3813694.1 2033014 g8668 i0 67.5 0.979591836734694 80 26 98 0 243 4 168 247 MDQ3813694.1 peptidyl-prolyl cis-trans isomerase [Armatimonadota bacterium] diamond 240 107 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30441810 30441810 PRJNA719595_P_NODE_8053_length_247_cov_0.896552_g8018_i0 PRJNA719595 8053 247 0.896552 2.21448344 Bacillati 1783272 Bacteria Bacteria 133 2.13e-34   NR MBC7807046.1 2033014 g8018 i0 79.7 2.90283400809717 79 16 96 0 1 237 356 434 MBC7807046.1 DUF1939 domain-containing protein [Armatimonadota bacterium] diamond 717 133 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31410943 31410943 PRJNA719595_P_NODE_7076_length_251_cov_0.876404_g7041_i0 PRJNA719595 7076 251 0.876404 2.19977404 Armatimonadota bacterium 2033014 Bacteria Bacteria 149 1.9899999999999992e-43   NR MBC8136171.1 2033014 g7041 i0 81.9 0.99203187250996006 83 15 99.2 0 1 249 19 101 MBC8136171.1 NAD(P)-dependent oxidoreductase [Armatimonadota bacterium] diamond 249 149 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32707232 32707232 PRJNA719595_P_NODE_8960_length_244_cov_0.912281_g8925_i0 PRJNA719595 8960 244 0.912281 2.22596564 Armatimonadota bacterium 2033014 Bacteria Bacteria 115 3.9299999999999997e-31   NR MES2465172.1 2033014 g8925 i0 81.5 0.799180327868853 65 12 79.9 0 48 242 1 65 MES2465172.1 RtcB family protein [Armatimonadota bacterium] diamond 195 115 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;