RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA719595" and tax_clade = "SAR86 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR86 cluster · 3 ✖

bioproject 1

  • PRJNA719595 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22386916 22386916 PRJNA719595_P_NODE_7858_length_248_cov_0.891429_g7823_i0 PRJNA719595 7858 248 0.891429 2.21074392 SAR86 cluster bacterium 2030880 Bacteria Bacteria 140 1.49e-36   NR URQ65826.1 2030880 g7823 i0 95 1.93548387096774 80 4 96.8 0 247 8 352 431 URQ65826.1 sodium-translocating pyrophosphatase [SAR86 cluster bacterium] diamond 480 140 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
28062682 28062682 PRJNA719595_P_NODE_8905_length_244_cov_0.912281_g8870_i0 PRJNA719595 8905 244 0.912281 2.22596564 SAR86 cluster bacterium 2030880 Bacteria Bacteria 150 1.14e-44   NR RCL40250.1 2030880 g8870 i0 96.1 0.934426229508197 76 3 93.4 0 17 244 1 76 RCL40250.1 MAG: acyl-CoA thioesterase [SAR86 cluster bacterium] diamond 228 150 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium
32075170 32075170 PRJNA719595_P_NODE_7478_length_249_cov_0.886364_g7443_i0 PRJNA719595 7478 249 0.886364 2.20704636 SAR86 cluster bacterium 2030880 Bacteria Bacteria 124 9.54e-33   NR MBL6683355.1 2030880 g7443 i0 98.4 0.734939759036145 61 1 73.5 0 1 183 237 297 MBL6683355.1 D-alanine--D-alanine ligase [SAR86 cluster bacterium] diamond 183 124 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;