RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA716463", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA716463 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3744342 3744342 PRJNA716463_P_NODE_111263_length_241_cov_4.428571_g110845_i0 PRJNA716463 111263 241 4.428571 10.67285611 Halobacteriales 2235 Archaea Archaea 80.5 9.95e-11   NTclustered gi|2087953847|gb|CP081958.1| 1017351 g110845 i0 84.81 18.2697095435685 79 12 33 0 1 79 2091181 2091259 Halobaculum magnesiiphilum strain NBRC 109044 chromosome, complete genome blastn 4403 80.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum magnesiiphilum
12187081 12187081 PRJNA716463_P_NODE_30210_length_310_cov_2.274262_g29793_i0 PRJNA716463 30210 310 2.274262 7.0502122 Halopiger xanaduensis 387343 Archaea Archaea 58.4 6.22e-4   NTclustered gi|335336085|gb|CP002839.1| 797210 g29793 i0 94.737 0.22258064516129 38 1 12 1 259 295 2408386 2408349 Halopiger xanaduensis SH-6, complete genome blastn 69 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halopiger Halopiger xanaduensis
27715821 27715821 PRJNA716463_P_NODE_75004_length_272_cov_3.231156_g74587_i0 PRJNA716463 75004 272 3.231156 8.78874432 Methanothrix sp. 90426 Archaea Archaea 55.5 1.73e-6   NR TFH48370.1 90426 g74587 i0 43.1 0.716911764705882 65 35 71.7 1 260 66 88 150 TFH48370.1 MAG: hypothetical protein E4G89_06400 [Methanothrix sp.] diamond 195 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29778118 29778118 PRJNA716463_P_NODE_42091_length_297_cov_3.191964_g41674_i0 PRJNA716463 42091 297 3.191964 9.48013308 root 1 Root_unresolved Root_unresolved 59.3 9.35e-8   NR WP_303346976.1 66852 g41674 i0 67.5 2.19191919191919 40 13 40.4 0 145 26 2 41 WP_303346976.1 DNA cytosine methyltransferase [Methanobrevibacter sp.] diamond 651 59.7 0.993299832495812 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;