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contig_metadata

22 rows where bioproject = "PRJNA716463" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA716463 · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3259340 3259340 PRJNA716463_P_NODE_47663_length_292_cov_2.534247_g47246_i0 PRJNA716463 47663 292 2.534247 7.40000124 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 239 1.94e-58   NTclustered gi|2893358400|emb|OZ220691.1| 2026742 g47246 i0 82.034 135.116438356164 295 40 100 8 1 292 2520154 2519870 MAG: Gemmatimonadota bacterium isolate 1766b9ea-3269-4cc1-97f5-695b05480569 genome assembly, chromosome: 1 blastn 39454 239 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
3259366 3259366 PRJNA716463_P_NODE_49383_length_291_cov_2.004587_g48966_i0 PRJNA716463 49383 291 2.004587 5.83334817 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 394 3.89e-105   NTclustered gi|2874254107|emb|OY970192.1| 412054 g48966 i0 91.156 217.103092783505 294 20 100 5 1 291 1592832 1592542 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 63177 394 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5810912 5810912 PRJNA716463_P_NODE_112985_length_240_cov_2.143713_g112567_i0 PRJNA716463 112985 240 2.143713 5.1449112 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 220 5.59e-53   NTclustered gi|575456455|gb|CP007128.1| 861299 g112567 i0 84.348 168.5125 230 30 95 6 7 234 3042471 3042696 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 40443 220 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
7086453 7086453 PRJNA716463_P_NODE_29746_length_310_cov_2.485232_g29329_i0 PRJNA716463 29746 310 2.485232 7.7042192 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 195 4.5499999999999995e-45   NTclustered gi|2874253938|emb|OY970263.1| 412054 g29329 i0 92.143 53.4322580645161 140 7 45 3 1 138 803621 803484 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 16564 195 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7086470 7086470 PRJNA716463_P_NODE_3046_length_552_cov_3.256785_g2653_i0 PRJNA716463 3046 552 3.256785 17.9774532 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 555 3.399999999999999e-153   NTclustered gi|575456455|gb|CP007128.1| 861299 g2653 i0 87.103 118.896739130435 504 48 91 12 23 524 3043758 3043270 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 65631 555 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
8360886 8360886 PRJNA716463_P_NODE_16907_length_310_cov_5.523207_g16490_i0 PRJNA716463 16907 310 5.523207 17.1219417 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 230 1.2499999999999995e-55   NTclustered gi|2874253938|emb|OY970263.1| 412054 g16490 i0 94.079 33.3903225806452 152 7 97 2 161 310 801318 801167 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 10351 230 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8361400 8361400 PRJNA716463_P_NODE_4967_length_469_cov_4.156566_g4561_i0 PRJNA716463 4967 469 4.156566 19.49429454 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 361 6.669999999999999e-95   NTclustered gi|2874254107|emb|OY970192.1| 412054 g4561 i0 80.882 89.319829424307 476 76 100 14 1 469 1594472 1594939 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 41891 361 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
12187892 12187892 PRJNA716463_P_NODE_83730_length_265_cov_3.645833_g83313_i0 PRJNA716463 83730 265 3.645833 9.66145745 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 250 8e-62   NTclustered gi|575456455|gb|CP007128.1| 861299 g83313 i0 84.191 29.0679245283019 272 28 100 12 1 265 3042752 3042489 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 7703 250 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
15221174 15221174 PRJNA716463_P_NODE_110292_length_242_cov_3.437870_g109874_i0 PRJNA716463 110292 242 3.43787 8.3196454 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 79 1.94e-15   NR MDP1861294.1 2026741 g109874 i0 67.9 3.60743801652893 56 18 69.4 0 75 242 2 57 MDP1861294.1 ATP-binding cassette domain-containing protein [Gemmatimonadaceae bacterium] diamond 873 79 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
16010369 16010369 PRJNA716463_P_NODE_30853_length_309_cov_2.627119_g30436_i0 PRJNA716463 30853 309 2.627119 8.11779771 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 187 7.58e-43   NTclustered gi|2874253978|emb|OY970303.1| 412054 g30436 i0 89.726 0.954692556634304 146 15 47 0 162 307 902974 903119 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 295 187 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17285626 17285626 PRJNA716463_P_NODE_15814_length_311_cov_3.508403_g15397_i0 PRJNA716463 15814 311 3.508403 10.91113333 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 318 2.6e-82   NTclustered gi|2874253938|emb|OY970263.1| 412054 g15397 i0 85.185 160.813504823151 297 38 95 5 18 311 802731 803024 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 50013 318 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18559197 18559197 PRJNA716463_P_NODE_11535_length_350_cov_3.877256_g11120_i0 PRJNA716463 11535 350 3.877256 13.570396 Pseudomonadati 3379134 Bacteria Bacteria 204 2.32e-61   NR HEU5170203.1 2448054 g11120 i0 81.4 1.93714285714286 113 21 96.9 0 341 3 240 352 HEU5170203.1 acetyl ornithine aminotransferase family protein [Gemmatimonadales bacterium] diamond 678 206 0.990291262135922 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
23660577 23660577 PRJNA716463_P_NODE_13539_length_327_cov_4.102362_g13123_i0 PRJNA716463 13539 327 4.102362 13.41472374 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 497 3.29e-136   NTclustered gi|2874253938|emb|OY970263.1| 412054 g13123 i0 94.969 219.605504587156 318 14 97 2 10 327 801715 802030 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 71811 497 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
27178265 27178265 PRJNA716463_P_NODE_97582_length_253_cov_3.022222_g97165_i0 PRJNA716463 97582 253 3.022222 7.64622166 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 122 2.07e-30   NR MEX0911858.1 2026742 g97165 i0 74.4 0.972332015810277 82 21 97.2 0 253 8 87 168 MEX0911858.1 HD domain-containing phosphohydrolase [Gemmatimonadota bacterium] diamond 246 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27778725 27778725 PRJNA716463_P_NODE_36044_length_299_cov_3.367257_g35627_i0 PRJNA716463 36044 299 3.367257 10.06809843 Longimicrobium sp. 2029185 Bacteria Bacteria 60.5 4.35e-8   NR HEU0013141.1 2029185 g35627 i0 69.4 0.491638795986622 49 15 49.2 0 146 292 75 123 HEU0013141.1 SusC/RagA family TonB-linked outer membrane protein [Longimicrobium sp.] diamond 147 60.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28325681 28325681 PRJNA716463_P_NODE_46646_length_293_cov_2.872727_g46229_i0 PRJNA716463 46646 293 2.872727 8.41709011 Pseudomonadati 3379134 Bacteria Bacteria 65.9 4.8e-10   NR MDH3272042.1 2026742 g46229 i0 56.8 1.37201365187713 44 19 45.1 0 2 133 385 428 MDH3272042.1 M20/M25/M40 family metallo-hydrolase [Gemmatimonadota bacterium] diamond 402 65.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29073309 29073309 PRJNA716463_P_NODE_97928_length_253_cov_2.172222_g97511_i0 PRJNA716463 97928 253 2.172222 5.49572166 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 55.1 4.23e-7   NR HXG45260.1 2448054 g97511 i0 48.2 0.66403162055336 56 29 66.4 0 207 40 93 148 HXG45260.1 DUF2380 domain-containing protein [Gemmatimonadales bacterium] diamond 168 55.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29894195 29894195 PRJNA716463_P_NODE_123491_length_215_cov_4.070423_g123073_i0 PRJNA716463 123491 215 4.070423 8.75140945 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 127 2.42e-34   NR HEX9755445.1 2448054 g123073 i0 85.9 2.97209302325581 71 10 99.1 0 2 214 171 241 HEX9755445.1 ABC transporter substrate-binding protein [Gemmatimonadales bacterium] diamond 639 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30178296 30178296 PRJNA716463_P_NODE_122332_length_221_cov_5.587838_g121914_i0 PRJNA716463 122332 221 5.587838 12.34912198 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.7 4.54e-4   NR HZB28403.1 2448054 g121914 i0 51.1 0.963800904977376 45 21 61.1 1 85 219 7 50 HZB28403.1 hypothetical protein [Gemmatimonadales bacterium] diamond 213 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30525895 30525895 PRJNA716463_P_NODE_81893_length_267_cov_1.922680_g81476_i0 PRJNA716463 81893 267 1.92268 5.1335556 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 122 1.78e-32   NR MDQ4079748.1 2026742 g81476 i0 86.8 1.51685393258427 68 9 76.4 0 267 64 158 225 MDQ4079748.1 hypothetical protein [Gemmatimonadota bacterium] diamond 405 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30620632 30620632 PRJNA716463_P_NODE_20053_length_310_cov_3.717300_g19636_i0 PRJNA716463 20053 310 3.7173 11.52363 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 89.4 2.66e-18   NR HET7250889.1 2448054 g19636 i0 87.2 0.454838709677419 47 6 45.5 0 164 304 31 77 HET7250889.1 acetyl ornithine aminotransferase family protein [Gemmatimonadales bacterium] diamond 141 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31790210 31790210 PRJNA716463_P_NODE_90557_length_260_cov_1.395722_g90140_i0 PRJNA716463 90557 260 1.395722 3.6288772 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 122 4.48e-30   NR HEU4630550.1 2026741 g90140 i0 77.9 0.992307692307692 86 18 99.2 1 260 3 593 677 HEU4630550.1 ABC transporter permease [Gemmatimonadaceae bacterium] diamond 258 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;