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contig_metadata

30 rows where bioproject = "PRJNA716463", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 30 ✖

tax_kingdom 1

  • Pseudomonadati · 30 ✖

bioproject 1

  • PRJNA716463 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7086544 7086544 PRJNA716463_P_NODE_35106_length_299_cov_3.703540_g34689_i0 PRJNA716463 35106 299 3.70354 11.0735846 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 86.1 2.74e-12   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g34689 i0 96.154 38.0434782608696 52 2 17 0 248 299 1475640 1475691 Bacteriovorax sp. HI3 DNA, complete genome blastn 11375 86.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
7086787 7086787 PRJNA716463_P_NODE_50086_length_290_cov_2.866359_g49669_i0 PRJNA716463 50086 290 2.866359 8.3124411 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 144 1.2299999999999999e-40   NR MBX3020391.1 2053517 g49669 i0 77.9 0.889655172413793 86 19 89 0 260 3 1 86 MBX3020391.1 di-trans,poly-cis-decaprenylcistransferase [Bdellovibrionales bacterium] diamond 258 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
10121710 10121710 PRJNA716463_P_NODE_92708_length_258_cov_1.664865_g92291_i0 PRJNA716463 92708 258 1.664865 4.2953517 Bacteriovorax 146784 Bacteria Bacteria 399 7.279999999999998e-107   NTclustered gi|1700689994|gb|CP030035.1| 960 g92291 i0 95.238 202.651162790698 252 12 98 0 2 253 1662186 1661935 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 52284 399 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
13462526 13462526 PRJNA716463_P_NODE_98191_length_253_cov_1.444444_g97774_i0 PRJNA716463 98191 253 1.444444 3.65444332 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 169 2.54e-47   NR MCO5112794.1 2026715 g97774 i0 94 5.97628458498024 84 5 99.6 0 253 2 226 309 MCO5112794.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit [Pseudobdellovibrionaceae bacterium] diamond 1512 169 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
14737605 14737605 PRJNA716463_P_NODE_8412_length_395_cov_4.369565_g7999_i0 PRJNA716463 8412 395 4.369565 17.25978175 Peredibacter starrii 28202 Bacteria Bacteria 531 3.9799999999999996e-146   NTclustered gi|2631252187|gb|CP139487.1| 28202 g7999 i0 90.977 155.086075949367 399 28 99 6 1 394 511852 512247 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 61259 531 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
17285715 17285715 PRJNA716463_P_NODE_22014_length_310_cov_3.375527_g21597_i0 PRJNA716463 22014 310 3.375527 10.4641337 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 178 4.58e-40   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g21597 i0 88 13.6935483870968 150 18 48 0 1 150 54867 55016 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 4245 178 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
19835111 19835111 PRJNA716463_P_NODE_5896_length_445_cov_11.704301_g5487_i0 PRJNA716463 5896 445 11.704301 52.08413945 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 702 0   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g5487 i0 95.455 158.898876404494 440 20 99 0 1 440 1293006 1292567 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 70710 702 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
23661819 23661819 PRJNA716463_P_NODE_95719_length_255_cov_2.324176_g95302_i0 PRJNA716463 95719 255 2.324176 5.9266488 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 91.3 4.1100000000000006e-21   NR MFT6630795.1 2081706 g95302 i0 73.8 4.16470588235294 61 16 71.8 0 72 254 1 61 MFT6630795.1 transcription elongation factor GreA [Bacteriovoracaceae bacterium] diamond 1062 91.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
26894001 26894001 PRJNA716463_P_NODE_53081_length_288_cov_3.204651_g52664_i0 PRJNA716463 53081 288 3.204651 9.22939488 Bacteriovorax stolpii 960 Bacteria Bacteria 114 3.36e-27   NR WP_221887022.1 960 g52664 i0 63.8 0.979166666666667 94 34 97.9 0 7 288 342 435 WP_221887022.1 U32 family peptidase [Bacteriovorax stolpii] diamond 282 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
27156979 27156979 PRJNA716463_P_NODE_105582_length_246_cov_4.005780_g105164_i0 PRJNA716463 105582 246 4.00578 9.8542188 Bdellovibrionota 3018035 Bacteria Bacteria 104 5.91e-24   NR WP_321391561.1 28202 g105164 i0 61.7 2.96341463414634 81 31 98.8 0 3 245 188 268 WP_321391561.1 fimbria/pilus outer membrane usher protein [Peredibacter starrii] diamond 729 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
27557342 27557342 PRJNA716463_P_NODE_67404_length_278_cov_2.487805_g66987_i0 PRJNA716463 67404 278 2.487805 6.9160979 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 75.5 1.29e-13   NR MBY0413065.1 2053517 g66987 i0 55.6 2.03956834532374 63 28 68 0 2 190 306 368 MBY0413065.1 DNA alkylation repair protein [Bdellovibrionales bacterium] diamond 567 75.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27715810 27715810 PRJNA716463_P_NODE_40964_length_298_cov_2.884444_g40547_i0 PRJNA716463 40964 298 2.884444 8.59564312 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 122 1.11e-31   NR PZP54943.1 349221 g40547 i0 58.9 1.12751677852349 112 32 99.7 2 297 1 126 236 PZP54943.1 MAG: hypothetical protein DI586_08395 [Micavibrio aeruginosavorus] diamond 336 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
27715814 27715814 PRJNA716463_P_NODE_54784_length_287_cov_2.570093_g54367_i0 PRJNA716463 54784 287 2.570093 7.37616691 Bdellovibrio sp. CG1 28201 Bacteria Bacteria 83.2 3.8e-16   NR PIS11782.1 1975526 g54367 i0 46.3 0.993031358885017 95 48 96.2 1 9 284 320 414 PIS11782.1 MAG: hypothetical protein COT73_02165 [Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8] diamond 285 83.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CG10_big_fil_rev_8_21_14_0_10_47_8
28315418 28315418 PRJNA716463_P_NODE_83546_length_265_cov_5.692708_g83129_i0 PRJNA716463 83546 265 5.692708 15.0856762 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 123 2.3199999999999995e-32   NR PZP56134.1 349221 g83129 i0 70.5 0.99622641509434 88 26 99.6 0 264 1 156 243 PZP56134.1 MAG: thioredoxin family protein, partial [Micavibrio aeruginosavorus] diamond 264 123 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
28441773 28441773 PRJNA716463_P_NODE_45966_length_293_cov_4.100000_g45549_i0 PRJNA716463 45966 293 4.1 12.013 Halobacteriovorax sp. HLS 2234000 Bacteria Bacteria 74.3 2.07e-13   NR WP_127718180.1 2234000 g45549 i0 62.5 1.02389078498294 48 18 49.1 0 145 2 54 101 WP_127718180.1 alpha/beta hydrolase [Halobacteriovorax sp. HLS] diamond 300 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. HLS
28694448 28694448 PRJNA716463_P_NODE_80407_length_268_cov_2.276923_g79990_i0 PRJNA716463 80407 268 2.276923 6.10215364 Micavibrio sp. 2024841 Bacteria Bacteria 132 1.6e-34   NR MAE50479.1 2024841 g79990 i0 78.7 1.99253731343284 89 19 99.6 0 1 267 239 327 MAE50479.1 ubiquinone biosynthesis protein [Micavibrio sp.] diamond 534 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28757270 28757270 PRJNA716463_P_NODE_41167_length_298_cov_2.733333_g40750_i0 PRJNA716463 41167 298 2.733333 8.14533234 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 168 2.63e-46   NR MBX3022593.1 2053517 g40750 i0 78.8 1.99328859060403 99 21 99.7 0 1 297 325 423 MBX3022593.1 UvrD-helicase domain-containing protein [Bdellovibrionales bacterium] diamond 594 168 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29104838 29104838 PRJNA716463_P_NODE_73588_length_273_cov_3.550000_g73171_i0 PRJNA716463 73588 273 3.55 9.6915 Oligoflexus sp. 1971216 Bacteria Bacteria 54.3 1.61e-6   NR WP_324950953.1 1971216 g73171 i0 85.7 0.307692307692308 28 4 30.8 0 2 85 148 175 WP_324950953.1 SRPBCC domain-containing protein [Oligoflexus sp.] diamond 84 54.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
29514955 29514955 PRJNA716463_P_NODE_81410_length_267_cov_2.881443_g80993_i0 PRJNA716463 81410 267 2.881443 7.69345281 Oligoflexia bacterium 2599941 Bacteria Bacteria 93.2 4.44e-20   NR MBX7137642.1 2599941 g80993 i0 57.1 2.57303370786517 84 32 94.4 1 6 257 176 255 MBX7137642.1 class I SAM-dependent rRNA methyltransferase [Oligoflexia bacterium] diamond 687 93.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30241641 30241641 PRJNA716463_P_NODE_16052_length_311_cov_2.953782_g15635_i0 PRJNA716463 16052 311 2.953782 9.18626202 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 83.6 3.41e-17   NR MCO5114272.1 2026715 g15635 i0 43.5 0.887459807073955 92 43 80.1 1 300 52 123 214 MCO5114272.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 276 83.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30620646 30620646 PRJNA716463_P_NODE_86733_length_263_cov_2.115789_g86316_i0 PRJNA716463 86733 263 2.115789 5.56452507 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 95.9 3.7300000000000006e-21   NR PZO78314.1 349221 g86316 i0 61.6 0.980988593155893 86 33 98.1 0 3 260 179 264 PZO78314.1 MAG: apolipoprotein N-acyltransferase, partial [Micavibrio aeruginosavorus] diamond 258 95.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30747150 30747150 PRJNA716463_P_NODE_119474_length_229_cov_3.403846_g119056_i0 PRJNA716463 119474 229 3.403846 7.79480734 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 91.3 4.63e-20   NR MBX3019863.1 2026715 g119056 i0 64 1.96506550218341 75 26 96.9 1 225 4 156 230 MBX3019863.1 M23 family metallopeptidase [Pseudobdellovibrionaceae bacterium] diamond 450 91.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30947379 30947379 PRJNA716463_P_NODE_78234_length_270_cov_1.563452_g77817_i0 PRJNA716463 78234 270 1.563452 4.2213204 Bacteriovorax 146784 Bacteria Bacteria 90.5 2.78e-19   NR WP_102245373.1 960 g77817 i0 52.4 1.84444444444444 82 37 88.9 1 30 269 43 124 WP_102245373.1 hypothetical protein [Bacteriovorax stolpii] diamond 498 90.9 0.995599559955996 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
31031708 31031708 PRJNA716463_P_NODE_35535_length_299_cov_3.539823_g35118_i0 PRJNA716463 35535 299 3.539823 10.58407077 Bacteriovorax stolpii 960 Bacteria Bacteria 104 4.56e-26   NR WP_102244044.1 960 g35118 i0 57.6 0.993311036789298 99 35 92.3 1 19 294 19 117 WP_102244044.1 hypothetical protein [Bacteriovorax stolpii] diamond 297 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
31125884 31125884 PRJNA716463_P_NODE_50195_length_290_cov_2.594470_g49778_i0 PRJNA716463 50195 290 2.59447 7.523963 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 65.5 6e-11   NR MFT6069644.1 2081706 g49778 i0 39.6 0.993103448275862 96 57 98.3 1 287 3 17 112 MFT6069644.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 288 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31125895 31125895 PRJNA716463_P_NODE_70035_length_276_cov_2.270936_g69618_i0 PRJNA716463 70035 276 2.270936 6.26778336 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 129 1.05e-32   NR HXH32399.1 2081706 g69618 i0 73.6 1.97826086956522 91 24 98.9 0 274 2 238 328 HXH32399.1 glucose PTS transporter subunit IIA [Bacteriovoracaceae bacterium] diamond 546 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31326415 31326415 PRJNA716463_P_NODE_64035_length_281_cov_1.225962_g63618_i0 PRJNA716463 64035 281 1.225962 3.44495322 Pseudomonadati 3379134 Bacteria Bacteria 58.2 2.01e-7   NR WP_021270821.1 1353529 g63618 i0 90 3.29893238434164 30 3 32 0 281 192 319 348 WP_021270821.1 RNA polymerase factor sigma-32 [Bacteriovorax sp. BSW11_IV] diamond 927 58.5 0.994871794871795 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. BSW11_IV
31727000 31727000 PRJNA716463_P_NODE_125697_length_202_cov_4.356589_g125279_i0 PRJNA716463 125697 202 4.356589 8.80030978 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 54.3 1.74e-6   NR MCO5113174.1 2026715 g125279 i0 50 0.95049504950495 64 32 95 0 6 197 400 463 MCO5113174.1 tetratricopeptide repeat protein [Pseudobdellovibrionaceae bacterium] diamond 192 54.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32022411 32022411 PRJNA716463_P_NODE_19978_length_310_cov_3.734177_g19561_i0 PRJNA716463 19978 310 3.734177 11.5759487 Pseudomonadati 3379134 Bacteria Bacteria 78.6 1.72e-14   NR MBC7659044.1 1971216 g19561 i0 78.7 1.81935483870968 47 10 45.5 0 9 149 100 146 MBC7659044.1 tetratricopeptide repeat protein [Oligoflexus sp.] diamond 564 78.6 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
32423199 32423199 PRJNA716463_P_NODE_108479_length_244_cov_1.801170_g108061_i0 PRJNA716463 108479 244 1.80117 4.3948548 Bdellovibrio bacteriovorus W 765869 Bacteria Bacteria 123 1.83e-31   NR AHI06484.1 765869 g108061 i0 70.1 0.94672131147541 77 23 94.7 0 9 239 25 101 AHI06484.1 hypothetical protein BDW_09920 [Bdellovibrio bacteriovorus W] diamond 231 123 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;