RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA716463", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA716463 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1983771 1983771 PRJNA716463_P_NODE_32202_length_302_cov_6.742358_g31785_i0 PRJNA716463 32202 302 6.742358 20.36192116 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 407 5.21e-109   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g31785 i0 92.58 6.09271523178808 283 21 98 0 1 283 5032507 5032789 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 1840 407 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
3259213 3259213 PRJNA716463_P_NODE_4003_length_501_cov_4.114486_g3604_i0 PRJNA716463 4003 501 4.114486 20.61357486 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 715 0   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g3604 i0 92.445 44.1596806387226 503 34 100 4 1 501 5032507 5033007 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 22124 715 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
17286805 17286805 PRJNA716463_P_NODE_94734_length_256_cov_2.185792_g94317_i0 PRJNA716463 94734 256 2.185792 5.59562752 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 187 6.1099999999999985e-43   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g94317 i0 80.309 40.1015625 259 41 99 8 3 256 5031705 5031452 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 10266 187 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
27399815 27399815 PRJNA716463_P_NODE_45543_length_294_cov_2.882353_g45126_i0 PRJNA716463 45543 294 2.882353 8.47411782 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 103 1.8199999999999994e-23   NR HYM31224.1 2952917 g45126 i0 51.6 0.969387755102041 95 46 96.9 0 286 2 335 429 HYM31224.1 thiamine pyrophosphate-dependent enzyme [Candidatus Cybelea sp.] diamond 285 103 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
28757273 28757273 PRJNA716463_P_NODE_52347_length_289_cov_1.712963_g51930_i0 PRJNA716463 52347 289 1.712963 4.95046307 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 118 4.7e-29   NR MFA5508723.1 3107663 g51930 i0 54.7 0.986159169550173 95 43 98.6 0 4 288 73 167 MFA5508723.1 radical SAM protein [Vulcanimicrobiota bacterium] diamond 285 118 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
32707212 32707212 PRJNA716463_P_NODE_84140_length_265_cov_2.390625_g83723_i0 PRJNA716463 84140 265 2.390625 6.33515625 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 68.2 7e-12   NR MFA5504510.1 3107663 g83723 i0 53.2 0.70188679245283 62 29 70.2 0 188 3 1 62 MFA5504510.1 DUF177 domain-containing protein [Vulcanimicrobiota bacterium] diamond 186 68.2 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
32896058 32896058 PRJNA716463_P_NODE_79140_length_269_cov_2.275510_g78723_i0 PRJNA716463 79140 269 2.27551 6.1211219 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 112 2.22e-26   NR MFA5505245.1 3107663 g78723 i0 67.8 1.94052044609665 87 28 97 0 265 5 188 274 MFA5505245.1 HAMP domain-containing sensor histidine kinase [Vulcanimicrobiota bacterium] diamond 522 112 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;