RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA716463" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA716463 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1983173 1983173 PRJNA716463_P_NODE_105802_length_246_cov_2.976879_g105384_i0 PRJNA716463 105802 246 2.976879 7.32312234 uncultured delta proteobacterium 34034 Bacteria Bacteria 257 4.39e-64   NTclustered gi|2874254016|emb|OY970341.1| 34034 g105384 i0 88.995 307.59756097561 209 21 85 2 6 213 594402 594195 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 75669 257 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
23660608 23660608 PRJNA716463_P_NODE_15299_length_312_cov_2.933054_g14882_i0 PRJNA716463 15299 312 2.933054 9.15112848 uncultured delta proteobacterium 34034 Bacteria Bacteria 318 2.6e-82   NTclustered gi|374854163|dbj|AP011765.1| 34034 g14882 i0 86.275 136.894230769231 306 27 94 4 1 294 13285 13587 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 42711 318 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
29420237 29420237 PRJNA716463_P_NODE_70409_length_276_cov_1.517241_g69992_i0 PRJNA716463 70409 276 1.517241 4.18758516 Deltaproteobacteria bacterium RBG_16_48_1 2026735 Bacteria Bacteria 43.1 0.0397   NR OGP91632.1 1797839 g69992 i0 28.2 0.847826086956522 78 51 84.8 1 32 265 124 196 OGP91632.1 MAG: hypothetical protein A2156_15280 [Deltaproteobacteria bacterium RBG_16_48_10] diamond 234 43.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_48_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;