RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA716463", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA716463 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3259416 3259416 PRJNA716463_P_NODE_52423_length_289_cov_1.425926_g52006_i0 PRJNA716463 52423 289 1.425926 4.12092614 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 315 3.09e-81   NTclustered gi|749166344|ref|XM_011136499.1| 110365 g52006 i0 100 0.588235294117647 170 0 59 0 1 170 172 3 Gregarina niphandrodes amine-terminal SAM-like domain phage integrase partial mRNA blastn 170 315 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
7086526 7086526 PRJNA716463_P_NODE_33926_length_299_cov_4.513274_g33509_i0 PRJNA716463 33926 299 4.513274 13.49468926 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.66e-4   NTclustered gi|1620112862|ref|XM_028674772.1| 5849 g33509 i0 97.222 0.120401337792642 36 0 12 1 241 276 684 650 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00125500), partial mRNA blastn 36 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
30378865 30378865 PRJNA716463_P_NODE_89252_length_261_cov_1.638298_g88835_i0 PRJNA716463 89252 261 1.638298 4.27595778 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 92.8 1.14e-19   NR OEH77646.1 88456 g88835 i0 46 14.5747126436782 100 39 97.7 1 256 2 831 930 OEH77646.1 valyl-tRNA synthetase [Cyclospora cayetanensis] diamond 3804 93.6 0.991452991452991 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;