RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA716463", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA716463 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27946932 27946932 PRJNA716463_P_NODE_12085_length_343_cov_4.370370_g11670_i0 PRJNA716463 12085 343 4.37037 14.9903691 Pseudomonadati 3379134 Bacteria Bacteria 137 1.7599999999999998e-37   NR MBI3985483.1 1932692 g11670 i0 57 7.46938775510204 107 46 93.6 0 343 23 137 243 MBI3985483.1 hypothetical protein [Lentisphaerota bacterium] diamond 2562 137 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29988875 29988875 PRJNA716463_P_NODE_58091_length_285_cov_1.693396_g57674_i0 PRJNA716463 58091 285 1.693396 4.8261786 Lentisphaerota bacterium 1932692 Bacteria Bacteria 63.2 4.12e-9   NR MBT4819704.1 1932692 g57674 i0 68.9 1.42105263157895 45 14 47.4 0 282 148 558 602 MBT4819704.1 right-handed parallel beta-helix repeat-containing protein [Lentisphaerota bacterium] diamond 405 63.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
31284212 31284212 PRJNA716463_P_NODE_29395_length_310_cov_2.561181_g28978_i0 PRJNA716463 29395 310 2.561181 7.9396611 Lentisphaeria bacterium 2053569 Bacteria Bacteria 58.9 1.4e-8   NR MDX9982221.1 2053569 g28978 i0 64.6 0.929032258064516 48 16 46.5 1 6 149 51 97 MDX9982221.1 RusA family crossover junction endodeoxyribonuclease [Lentisphaeria bacterium] diamond 288 58.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
31389891 31389891 PRJNA716463_P_NODE_52936_length_288_cov_3.772093_g52519_i0 PRJNA716463 52936 288 3.772093 10.86362784 Bacteria 2 Bacteria Bacteria 118 1.8599999999999995e-31   NR OGV47434.1 1798576 g52519 i0 55.8 9.86458333333333 95 41 99 1 287 3 57 150 OGV47434.1 MAG: hypothetical protein A2X46_14020 [Lentisphaerae bacterium GWF2_57_35] diamond 2841 118 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_57_35

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;