RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA716463", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA716463 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27715820 27715820 PRJNA716463_P_NODE_74584_length_273_cov_1.345000_g74167_i0 PRJNA716463 74584 273 1.345 3.67185 Candidatus Rhabdochlamydia 292833 Bacteria Bacteria 95.9 3.21e-21   NR WP_215216910.1 292833 g74167 i0 85.5 0.604395604395604 55 8 60.4 0 271 107 289 343 WP_215216910.1 MULTISPECIES: recombinase RecA [Candidatus Rhabdochlamydia] diamond 165 95.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia  
29767608 29767608 PRJNA716463_P_NODE_93251_length_257_cov_3.130435_g92834_i0 PRJNA716463 93251 257 3.130435 8.04521795 Candidatus Protochlamydia amoebophila 362787 Bacteria Bacteria 123 1.7899999999999998e-32   NR WP_213105198.1 362787 g92834 i0 74.7 0.875486381322957 75 19 87.5 0 31 255 128 202 WP_213105198.1 IS5 family transposase [Candidatus Protochlamydia amoebophila] diamond 225 123 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;