RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA716463", tax_clade = "Opisthokonta" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA716463 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18560558 18560558 PRJNA716463_P_NODE_90435_length_260_cov_1.647059_g90018_i0 PRJNA716463 90435 260 1.647059 4.2823534 Gilbertella persicaria 101096 Fungi Fungi 76.8 1.41e-9   NTclustered gi|2323722218|ref|XM_051581225.1| 101096 g90018 i0 95.745 1.66923076923077 47 2 18 0 36 82 123 77 Gilbertella persicaria ribosomal protein S11-domain-containing protein (B0P05DRAFT_569074), partial mRNA blastn 434 76.8 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
31579644 31579644 PRJNA716463_P_NODE_45296_length_294_cov_3.352941_g44879_i0 PRJNA716463 45296 294 3.352941 9.85764654 Rhizopus 4842 Fungi Fungi 48.9 1.88e-4   NR KAG1533545.1 64495 g44879 i0 48.9 3.74489795918367 47 21 44.9 1 205 74 63 109 KAG1533545.1 hypothetical protein G6F51_012555 [Rhizopus arrhizus] diamond 1101 49.3 0.991886409736308 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus arrhizus
32675608 32675608 PRJNA716463_P_NODE_73360_length_274_cov_0.850746_g72943_i0 PRJNA716463 73360 274 0.850746 2.33104404 Mucor lusitanicus 29924 Fungi Fungi 43.5 0.00725   NR KAF1796218.1 29924 g72943 i0 34.5 0.635036496350365 58 36 63.5 2 272 99 7 62 KAF1796218.1 hypothetical protein FB192DRAFT_1405772 [Mucor lusitanicus] diamond 174 43.5 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor lusitanicus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;