RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA716463", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA716463 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28883569 28883569 PRJNA716463_P_NODE_14828_length_314_cov_3.000000_g14412_i0 PRJNA716463 14828 314 3 9.42 Rhodothermales bacterium 2306054 Bacteria Bacteria 72.4 6.61e-13   NR HMB89501.1 2306054 g14412 i0 69.4 0.468152866242038 49 15 46.8 0 7 153 43 91 HMB89501.1 response regulator transcription factor [Rhodothermales bacterium] diamond 147 72.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
30305244 30305244 PRJNA716463_P_NODE_78032_length_270_cov_2.126904_g77615_i0 PRJNA716463 78032 270 2.126904 5.7426408 Rhodothermus marinus 29549 Bacteria Bacteria 108 7.2099999999999985e-28   NR WP_054685986.1 29549 g77615 i0 56.3 0.966666666666667 87 38 96.7 0 9 269 20 106 WP_054685986.1 4Fe-4S dicluster domain-containing protein, partial [Rhodothermus marinus] diamond 261 108 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
31315923 31315923 PRJNA716463_P_NODE_115735_length_235_cov_4.487654_g115317_i0 PRJNA716463 115735 235 4.487654 10.5459869 Rubrivirga sp. IMCC452 1885344 Bacteria Bacteria 48.1 4.3e-4   NR WP_412063302.1 3391614 g115317 i0 36.3 1.99148936170213 80 48 99.6 2 235 2 401 479 WP_412063302.1 two-component regulator propeller domain-containing protein [Rubrivirga sp. IMCC45206] diamond 468 48.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
32011861 32011861 PRJNA716463_P_NODE_122438_length_221_cov_4.101351_g122020_i0 PRJNA716463 122438 221 4.101351 9.06398571 Rhodothermus marinus 29549 Bacteria Bacteria 112 1.74e-28   NR WP_014065941.1 29549 g122020 i0 77.1 3.84162895927602 70 16 95 0 220 11 108 177 WP_014065941.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Rhodothermus marinus] diamond 849 112 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;