RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA716463", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA716463 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1983511 1983511 PRJNA716463_P_NODE_14102_length_321_cov_2.596774_g13686_i0 PRJNA716463 14102 321 2.596774 8.33564454 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 383 9.399999999999996e-102   NTclustered gi|300078498|gb|GU001160.1| 5755 g13686 i0 88.615 22.7476635514019 325 24 100 10 1 321 6755 7070 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7302 383 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8845626 8845626 PRJNA716463_P_NODE_11187_length_355_cov_2.248227_g10772_i0 PRJNA716463 11187 355 2.248227 7.98120585 Acanthamoeba 5754 Discosea other_Eukaryota 656 0   NTclustered gi|576663737|gb|KF010846.1| 29195 g10772 i0 100 101.354929577465 355 0 100 0 1 355 378 24 Acanthamoeba griffini strain MYP2004 18S ribosomal RNA gene, partial sequence blastn 35981 656 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba griffini
24144235 24144235 PRJNA716463_P_NODE_116719_length_234_cov_2.583851_g116301_i0 PRJNA716463 116719 234 2.583851 6.04621134 Acanthamoeba 5754 Discosea other_Eukaryota 433 6.41e-117   NTclustered gi|2044079942|gb|MZ272134.1| 5756 g116301 i0 100 100.713675213675 234 0 100 0 1 234 2316 2549 Acanthamoeba sp. isolate AcW153B small subunit ribosomal RNA gene, partial sequence blastn 23567 433 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
24934577 24934577 PRJNA716463_P_NODE_4840_length_473_cov_4.007500_g4435_i0 PRJNA716463 4840 473 4.0075 18.955475 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 610 6.049999999999999e-170   NTclustered gi|300078498|gb|GU001160.1| 5755 g4435 i0 90.061 9.19238900634249 493 17 100 19 1 473 5418 5898 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4348 610 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24934745 24934745 PRJNA716463_P_NODE_59040_length_284_cov_2.540284_g58623_i0 PRJNA716463 59040 284 2.540284 7.21440656 Acanthamoeba polyphaga 5757 Discosea other_Eukaryota 279 1.1e-70   NTclustered gi|932090235|gb|KP054475.2| 5757 g58623 i0 84.561 36.443661971831 285 41 100 3 1 284 1645 1363 Acanthamoeba polyphaga strain Linc Ap-1 mitochondrion, complete genome blastn 10350 279 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
28820168 28820168 PRJNA716463_P_NODE_62048_length_282_cov_2.200957_g61631_i0 PRJNA716463 62048 282 2.200957 6.20669874 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 114 4.8e-28   NR XP_004341646.1 1257118 g61631 i0 57.9 3.04255319148936 95 39 100 1 282 1 202 296 XP_004341646.1 papain family cysteine protease containing protein [Acanthamoeba castellanii str. Neff] diamond 858 114 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;