RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA715462" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5020553 5020553 PRJNA715462_P_NODE_44244_length_268_cov_1.574359_g43448_i0 PRJNA715462 44244 268 1.574359 4.21928212 Vermamoeba 1260114 Tubulinea other_Eukaryota 496 9.429999999999999e-136   NTclustered gi|300078496|gb|GU001158.1| 5778 g43448 i0 100 55.6977611940299 268 0 100 0 1 268 2896 2629 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14927 496 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10910287 10910287 PRJNA715462_P_NODE_55149_length_249_cov_0.875000_g54353_i0 PRJNA715462 55149 249 0.875 2.17875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 424 4.15e-114   NTclustered gi|421976355|gb|JQ519494.1| 5778 g54353 i0 97.571 24.1526104417671 247 6 99 0 3 249 292 46 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 6014 424 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13459970 13459970 PRJNA715462_P_NODE_55951_length_248_cov_0.880000_g55155_i0 PRJNA715462 55951 248 0.88 2.1824 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 459 1.13e-124   NTclustered gi|292559443|ref|NC_013986.1| 5778 g55155 i0 100 1 248 0 100 0 1 248 25990 25743 Hartmannella vermiformis mitochondrion, complete genome blastn 248 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16008268 16008268 PRJNA715462_P_NODE_28953_length_332_cov_1.729730_g28157_i0 PRJNA715462 28953 332 1.72973 5.7427036 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 569 6.979999999999998e-158   NTclustered gi|300078496|gb|GU001158.1| 5778 g28157 i0 97.59 5.66265060240964 332 8 100 0 1 332 1284 1615 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1880 569 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17284532 17284532 PRJNA715462_P_NODE_68434_length_241_cov_0.916667_g67638_i0 PRJNA715462 68434 241 0.916667 2.20916747 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 211 3.38e-50   NTclustered gi|909719645|gb|KT185625.1| 5778 g67638 i0 90.625 0.663900414937759 160 14 66 1 83 241 894 735 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 160 211 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21108289 21108289 PRJNA715462_P_NODE_35097_length_298_cov_1.368889_g34301_i0 PRJNA715462 35097 298 1.368889 4.07928922 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 542 1.35e-149   NTclustered gi|909719645|gb|KT185625.1| 5778 g34301 i0 99.662 42.496644295302 296 1 99 0 1 296 6716 7011 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12664 542 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;