RNAquarium Metadata Server
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contig_metadata

14 rows where bioproject = "PRJNA715462" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA715462 · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9634306 9634306 PRJNA715462_P_NODE_32408_length_312_cov_1.267782_g31612_i0 PRJNA715462 32408 312 1.267782 3.95547984 Gemmatimonas aurantiaca 173480 Bacteria Bacteria 52.8 0.029   NTclustered gi|226088597|dbj|AP009153.1| 379066 g31612 i0 100 0.0897435897435897 28 0 9 0 19 46 4230426 4230399 Gemmatimonas aurantiaca T-27 DNA, complete genome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
19832870 19832870 PRJNA715462_P_NODE_40256_length_280_cov_1.483092_g39460_i0 PRJNA715462 40256 280 1.483092 4.1526576 FCB group 1783270 Bacteria Bacteria 162 2.63e-46   NR HEY9229717.1 2026741 g39460 i0 75.3 10.95 93 23 99.6 0 279 1 86 178 HEY9229717.1 NADP-dependent isocitrate dehydrogenase [Gemmatimonadaceae bacterium] diamond 3066 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26872928 26872928 PRJNA715462_P_NODE_43661_length_270_cov_1.350254_g42865_i0 PRJNA715462 43661 270 1.350254 3.6456858 Pseudomonadati 3379134 Bacteria Bacteria 96.7 2.63e-21   NR NJD09881.1 2026742 g42865 i0 61.9 15.2666666666667 84 27 93.3 1 263 12 17 95 NJD09881.1 asparagine synthase B [Gemmatimonadota bacterium] diamond 4122 96.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27399755 27399755 PRJNA715462_P_NODE_59683_length_246_cov_0.890173_g58887_i0 PRJNA715462 59683 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 158 2.1399999999999993e-46   NR MEY2733031.1 2026742 g58887 i0 100 0.98780487804878 81 0 98.8 0 2 244 90 170 MEY2733031.1 hypothetical protein [Gemmatimonadota bacterium] diamond 243 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27852085 27852085 PRJNA715462_P_NODE_48964_length_255_cov_1.269231_g48168_i0 PRJNA715462 48964 255 1.269231 3.23653905 Pseudomonadati 3379134 Bacteria Bacteria 124 2.66e-31   NR MFC1791531.1 2026742 g48168 i0 73.8 2.84705882352941 80 21 94.1 0 14 253 310 389 MFC1791531.1 NAD-dependent succinate-semialdehyde dehydrogenase [Gemmatimonadota bacterium] diamond 726 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28315334 28315334 PRJNA715462_P_NODE_50686_length_251_cov_0.865169_g49890_i0 PRJNA715462 50686 251 0.865169 2.17157419 Longimicrobium sp. 2029185 Bacteria Bacteria 132 5.31e-36   NR HEX6373141.1 2029185 g49890 i0 79.5 0.99203187250996006 83 17 99.2 0 2 250 91 173 HEX6373141.1 SDR family oxidoreductase [Longimicrobium sp.] diamond 249 132 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29704090 29704090 PRJNA715462_P_NODE_37370_length_289_cov_1.129630_g36574_i0 PRJNA715462 37370 289 1.12963 3.2646307 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.5 0.0351   NR MCC6319422.1 2026741 g36574 i0 29.7 0.768166089965398 74 51 76.8 1 40 261 5 77 MCC6319422.1 phosphoribosylformylglycinamidine synthase subunit PurL [Gemmatimonadaceae bacterium] diamond 222 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29894145 29894145 PRJNA715462_P_NODE_46711_length_261_cov_1.500000_g45915_i0 PRJNA715462 46711 261 1.5 3.915 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.1 3.71e-5   NR MEZ4455052.1 2448054 g45915 i0 36.3 3.94252873563218 80 48 92 2 1 240 12 88 MEZ4455052.1 CBS domain-containing protein [Gemmatimonadales bacterium] diamond 1029 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30241576 30241576 PRJNA715462_P_NODE_48652_length_256_cov_1.256831_g47856_i0 PRJNA715462 48652 256 1.256831 3.21748736 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 48.9 1.12e-4   NR MEX2465837.1 2026742 g47856 i0 55.6 3.22265625 45 20 52.7 0 121 255 3 47 MEX2465837.1 acyl-CoA dehydrogenase family protein [Gemmatimonadota bacterium] diamond 825 48.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30368333 30368333 PRJNA715462_P_NODE_36372_length_292_cov_1.406393_g35576_i0 PRJNA715462 36372 292 1.406393 4.10666756 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 42.7 0.0318   NR HKI94149.1 2448054 g35576 i0 81.5 0.277397260273973 27 5 27.7 0 100 20 1 27 HKI94149.1 GNAT family N-acetyltransferase [Gemmatimonadales bacterium] diamond 81 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31442394 31442394 PRJNA715462_P_NODE_57156_length_248_cov_0.880000_g56360_i0 PRJNA715462 57156 248 0.88 2.1824 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 104 1.09e-24   NR MBX3175407.1 2026741 g56360 i0 62.7 1.00403225806452 83 30 99.2 1 2 247 184 266 MBX3175407.1 tRNA lysidine(34) synthetase TilS [Gemmatimonadaceae bacterium] diamond 249 104 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31569181 31569181 PRJNA715462_P_NODE_59696_length_246_cov_0.890173_g58900_i0 PRJNA715462 59696 246 0.890173 2.18982558 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 159 5.4999999999999985e-43   NR MCE2942523.1 2026742 g58900 i0 100 1 82 0 100 0 1 246 591 672 MCE2942523.1 TonB-dependent receptor [Gemmatimonadota bacterium] diamond 246 159 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32391500 32391500 PRJNA715462_P_NODE_65279_length_243_cov_0.905882_g64483_i0 PRJNA715462 65279 243 0.905882 2.20129326 Longimicrobium sp. 2029185 Bacteria Bacteria 99 6.160000000000001e-22   NR HEX8244975.1 2029185 g64483 i0 56.3 0.987654320987654 80 35 98.8 0 4 243 452 531 HEX8244975.1 patatin-like phospholipase family protein [Longimicrobium sp.] diamond 240 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32612742 32612742 PRJNA715462_P_NODE_54680_length_249_cov_0.875000_g53884_i0 PRJNA715462 54680 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 148 1.0199999999999999e-43   NR MEY2734549.1 2026742 g53884 i0 100 1 83 0 100 0 1 249 44 126 MEY2734549.1 hypothetical protein [Gemmatimonadota bacterium] diamond 249 148 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;