RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA715462", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 26 ✖

tax_kingdom 1

  • Pseudomonadati · 26 ✖

bioproject 1

  • PRJNA715462 · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
706289 706289 PRJNA715462_P_NODE_57361_length_247_cov_1.729885_g56565_i0 PRJNA715462 57361 247 1.729885 4.27281595 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 112 8.37e-30   NR GJM17742.1 2202153 g56565 i0 72 0.995951417004049 82 18 99.6 1 2 247 12 88 GJM17742.1 MAG: hypothetical protein DHS20C13_30690 [Thermodesulfobacteriota bacterium] diamond 246 112 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
1982367 1982367 PRJNA715462_P_NODE_62442_length_245_cov_0.895349_g61646_i0 PRJNA715462 62442 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 118 1.79e-30   NR OQX20245.1 1934250 g61646 i0 71.6 5.95102040816327 81 23 99.2 0 244 2 34 114 OQX20245.1 MAG: polyphosphate kinase 2 [Desulfobulbaceae bacterium A2] diamond 1458 119 0.991596638655462 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae   Desulfobulbaceae bacterium A2
3743981 3743981 PRJNA715462_P_NODE_42803_length_272_cov_1.924623_g42007_i0 PRJNA715462 42803 272 1.924623 5.23497456 Geobacter 28231 Bacteria Bacteria 52.8 0.025   NTclustered gi|779731694|gb|CP010430.1| 35554 g42007 i0 100 0.617647058823529 28 0 10 0 204 231 2130121 2130148 Geobacter sulfurreducens strain AM-1 genome blastn 168 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
4534080 4534080 PRJNA715462_P_NODE_29804_length_327_cov_1.212598_g29008_i0 PRJNA715462 29804 327 1.212598 3.96519546 Desulfobacterales bacterium 2044940 Bacteria Bacteria 54.7 0.009   NTclustered gi|2621701778|emb|OY759308.1| 2044940 g29008 i0 100 0.174311926605505 29 0 9 0 41 69 511667 511695 MAG: Desulfobacterales bacterium isolate 4b48c405-a8b0-44ce-a896-9916d3c4254b genome assembly, chromosome: 1 blastn 57 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
26745590 26745590 PRJNA715462_P_NODE_56301_length_248_cov_0.880000_g55505_i0 PRJNA715462 56301 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 75.5 1.13e-13   NR MDZ7832195.1 2044940 g55505 i0 63.6 5.79435483870968 55 18 66.5 1 81 245 1 53 MDZ7832195.1 glycerol kinase GlpK [Desulfobacterales bacterium] diamond 1437 75.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
27399734 27399734 PRJNA715462_P_NODE_2443_length_1692_cov_2.154416_g2074_i0 PRJNA715462 2443 1692 2.154416 36.45271872 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 51.2 0.00342   NR GJM17643.1 2202153 g2074 i0 24.1 0.404255319148936 228 144 38.7 9 747 94 4 212 GJM17643.1 MAG: hypothetical protein DHS20C13_29700 [Thermodesulfobacteriota bacterium] diamond 684 51.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27494392 27494392 PRJNA715462_P_NODE_68423_length_241_cov_0.916667_g67627_i0 PRJNA715462 68423 241 0.916667 2.20916747 Desulfobacterales bacterium 2044940 Bacteria Bacteria 59.3 1.49e-9   NR MCP3922521.1 2044940 g67627 i0 46.7 0.746887966804979 60 31 74.7 1 24 203 9 67 MCP3922521.1 hypothetical protein [Desulfobacterales bacterium] diamond 180 59.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
27810246 27810246 PRJNA715462_P_NODE_35064_length_298_cov_1.711111_g34268_i0 PRJNA715462 35064 298 1.711111 5.09911078 Candidatus Magnetomorum sp. HK-1 1509431 Bacteria Bacteria 43.9 0.0124   NR KPA15116.1 1509431 g34268 i0 36.1 0.36241610738255 36 23 36.2 0 9 116 8 43 KPA15116.1 prenyltransferase, partial [Candidatus Magnetomorum sp. HK-1] diamond 108 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Candidatus Magnetomoraceae Candidatus Magnetomorum Candidatus Magnetomorum sp. HK-1
28220336 28220336 PRJNA715462_P_NODE_47126_length_260_cov_1.385027_g46330_i0 PRJNA715462 47126 260 1.385027 3.6010702 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 110 9.49e-26   NR NNG00607.1 2049433 g46330 i0 58.3 0.969230769230769 84 34 96.9 1 256 5 938 1020 NNG00607.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 252 110 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
28283426 28283426 PRJNA715462_P_NODE_40006_length_281_cov_1.283654_g39210_i0 PRJNA715462 40006 281 1.283654 3.60706774 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 60.1 4.3e-8   NR MFC1844185.1 2202153 g39210 i0 46.3 0.715302491103203 67 29 71.5 1 78 278 209 268 MFC1844185.1 DHHA2 domain-containing protein [Thermodesulfobacteriota bacterium] diamond 201 60.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
28346790 28346790 PRJNA715462_P_NODE_47626_length_259_cov_0.860215_g46830_i0 PRJNA715462 47626 259 0.860215 2.22795685 Syntrophaceae bacterium 2052184 Bacteria Bacteria 47 0.00109   NR MEN6466244.1 2052184 g46830 i0 30.6 0.833976833976834 72 50 83.4 0 29 244 51 122 MEN6466244.1 PEP-CTERM sorting domain-containing protein [Syntrophaceae bacterium] diamond 216 47 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
28662693 28662693 PRJNA715462_P_NODE_58807_length_247_cov_0.885057_g58011_i0 PRJNA715462 58807 247 0.885057 2.18609079 Desulfomonilaceae bacterium 3034167 Bacteria Bacteria 45.1 0.00606   NR HTY25060.1 3034167 g58011 i0 40 0.728744939271255 60 31 72.9 1 184 5 577 631 HTY25060.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Desulfomonilaceae bacterium] diamond 180 45.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfomonilia Desulfomonilales Desulfomonilaceae   Desulfomonilaceae bacterium
28757208 28757208 PRJNA715462_P_NODE_61027_length_245_cov_1.372093_g60231_i0 PRJNA715462 61027 245 1.372093 3.36162785 Desulfovibrionales bacterium 2448050 Bacteria Bacteria 48.5 1.08e-4   NR MFP4315930.1 2448050 g60231 i0 36.9 0.795918367346939 65 39 79.6 2 37 231 58 120 MFP4315930.1 universal stress protein [Desulfovibrionales bacterium] diamond 195 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales     Desulfovibrionales bacterium
28788680 28788680 PRJNA715462_P_NODE_31687_length_316_cov_1.267490_g30891_i0 PRJNA715462 31687 316 1.26749 4.0052684 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 48.5 8.12e-4   NR HAO22905.1 2049433 g30891 i0 26 0.911392405063291 96 68 88.3 1 1 279 441 536 HAO22905.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 288 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29104751 29104751 PRJNA715462_P_NODE_64808_length_243_cov_0.905882_g64012_i0 PRJNA715462 64808 243 0.905882 2.20129326 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 56.6 4.69e-7   NR MCP3875986.1 2049433 g64012 i0 43.2 1.74074074074074 74 34 82.7 2 3 203 504 576 MCP3875986.1 reverse transcriptase family protein [Desulfobacteraceae bacterium] diamond 423 56.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29357267 29357267 PRJNA715462_P_NODE_47689_length_258_cov_1.989189_g46893_i0 PRJNA715462 47689 258 1.989189 5.13210762 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 42.4 0.0128   NR MFQ5843315.1 2202153 g46893 i0 32.7 0.604651162790698 52 33 58.1 1 62 211 10 61 MFQ5843315.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 156 42.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29357270 29357270 PRJNA715462_P_NODE_51589_length_251_cov_0.865169_g50793_i0 PRJNA715462 51589 251 0.865169 2.17157419 Desulfonema ishimotonii 45657 Bacteria Bacteria 114 3.6800000000000005e-27   NR WP_124328343.1 45657 g50793 i0 63.8 1.91235059760956 80 29 95.6 0 246 7 82 161 WP_124328343.1 alpha/beta hydrolase family esterase [Desulfonema ishimotonii] diamond 480 114 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfococcaceae Desulfonema Desulfonema ishimotonii
29809662 29809662 PRJNA715462_P_NODE_61691_length_245_cov_0.895349_g60895_i0 PRJNA715462 61691 245 0.895349 2.19360505 Desulfocurvus 700595 Bacteria Bacteria 51.6 2.77e-5   NR WP_245588475.1 399548 g60895 i0 67.6 1.2734693877551 34 11 41.6 0 138 239 30 63 WP_245588475.1 diaminopimelate decarboxylase [Desulfocurvus vexinensis] diamond 312 51.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvus Desulfocurvus vexinensis
29988799 29988799 PRJNA715462_P_NODE_58131_length_247_cov_0.885057_g57335_i0 PRJNA715462 58131 247 0.885057 2.18609079 Desulfobacterales bacterium 2044940 Bacteria Bacteria 77.4 2.45e-14   NR MCU0559980.1 2044940 g57335 i0 47.5 1.96761133603239 80 38 97.2 1 240 1 42 117 MCU0559980.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Desulfobacterales bacterium] diamond 486 77.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
30178245 30178245 PRJNA715462_P_NODE_51932_length_250_cov_1.740113_g51136_i0 PRJNA715462 51932 250 1.740113 4.3502825 Desulfobacterales bacterium 2044940 Bacteria Bacteria 45.1 0.00594   NR MCG8638584.1 2044940 g51136 i0 33.8 0.96 80 48 92.4 2 232 2 15 92 MCG8638584.1 NAD-dependent epimerase/dehydratase family protein [Desulfobacterales bacterium] diamond 240 45.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
31442386 31442386 PRJNA715462_P_NODE_47156_length_260_cov_1.267380_g46360_i0 PRJNA715462 47156 260 1.26738 3.295188 Solidesulfovibrio aerotolerans 295255 Bacteria Bacteria 42.7 0.0442   NR WP_160962005.1 295255 g46360 i0 33.8 0.923076923076923 80 41 78.5 3 49 252 206 285 WP_160962005.1 acyltransferase family protein [Solidesulfovibrio aerotolerans] diamond 240 42.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Solidesulfovibrio Solidesulfovibrio aerotolerans
31474139 31474139 PRJNA715462_P_NODE_27136_length_345_cov_1.077206_g26340_i0 PRJNA715462 27136 345 1.077206 3.7163607 Desulfovermiculus sp. 2821143 Bacteria Bacteria 55.1 2.23e-7   NR MFO7876311.1 2821143 g26340 i0 65.2 0.4 46 14 40 1 102 239 24 67 MFO7876311.1 hypothetical protein [Desulfovermiculus sp.] diamond 138 55.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfohalobiaceae Desulfovermiculus Desulfovermiculus sp.
31853495 31853495 PRJNA715462_P_NODE_48117_length_257_cov_1.652174_g47321_i0 PRJNA715462 48117 257 1.652174 4.24608718 Desulfamplus sp. 2006184 Bacteria Bacteria 43.9 0.0179   NR MBF0413228.1 2006184 g47321 i0 35.2 0.630350194552529 54 35 63 0 59 220 1013 1066 MBF0413228.1 filamentous hemagglutinin N-terminal domain-containing protein [Desulfamplus sp.] diamond 162 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfamplus Desulfamplus sp.
32360113 32360113 PRJNA715462_P_NODE_44019_length_269_cov_1.321429_g43223_i0 PRJNA715462 44019 269 1.321429 3.55464401 Desulfobacula sp. 2593537 Bacteria Bacteria 70.9 2.32e-12   NR MDA3786894.1 2593537 g43223 i0 54.5 0.613382899628253 55 25 61.3 0 267 103 2 56 MDA3786894.1 NHL repeat-containing protein [Desulfobacula sp.] diamond 165 70.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobacula Desulfobacula sp.
32486561 32486561 PRJNA715462_P_NODE_29259_length_330_cov_2.023346_g28463_i0 PRJNA715462 29259 330 2.023346 6.6770418 Candidatus Magnetomorum sp. HK-1 1509431 Bacteria Bacteria 44.7 0.0233   NR KPA10826.1 1509431 g28463 i0 40.8 0.445454545454545 49 29 44.5 0 37 183 3112 3160 KPA10826.1 secreted protein containing Dystroglycan-type cadherin-like domain protein [Candidatus Magnetomorum sp. HK-1] diamond 147 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Candidatus Magnetomoraceae Candidatus Magnetomorum Candidatus Magnetomorum sp. HK-1
32864619 32864619 PRJNA715462_P_NODE_63580_length_244_cov_0.900585_g62784_i0 PRJNA715462 63580 244 0.900585 2.1974274 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 110 5.61e-26   NR HEY7536226.1 2202153 g62784 i0 63.3 0.971311475409836 79 29 97.1 0 237 1 435 513 HEY7536226.1 reverse transcriptase domain-containing protein [Thermodesulfobacteriota bacterium] diamond 237 110 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;