RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA715462", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7570097 7570097 PRJNA715462_P_NODE_27906_length_339_cov_1.736842_g27110_i0 PRJNA715462 27906 339 1.736842 5.88789438 Olpidium bornovanus 278681 Fungi Fungi 132 3.07e-33   NR BAL15351.1 278681 g27110 i0 54 2 113 52 100 0 1 339 173 285 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 678 132 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
17283858 17283858 PRJNA715462_P_NODE_34334_length_302_cov_1.008734_g33538_i0 PRJNA715462 34334 302 1.008734 3.04637668 Eukaryota 2759 Fungi Fungi 151 1.19e-40   NR BAL15353.1 70189 g33538 i0 68 25.7980132450331 100 32 99.3 0 302 3 297 396 BAL15353.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 7791 152 0.993421052631579 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
27220261 27220261 PRJNA715462_P_NODE_25362_length_358_cov_1.445614_g24566_i0 PRJNA715462 25362 358 1.445614 5.17529812 Eukaryota 2759 Fungi Fungi 125 1.23e-34   NR KAG5461717.1 278681 g24566 i0 64 3.11731843575419 89 32 74.6 0 271 5 2 90 KAG5461717.1 MAG: 60S ribosomal protein L33-A-like protein [Olpidium bornovanus] diamond 1116 125 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;