RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA715462", tax_clade = "ac1 cluster" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 2 ✖

tax_clade 1

  • ac1 cluster · 2 ✖

bioproject 1

  • PRJNA715462 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28378359 28378359 PRJNA715462_P_NODE_50506_length_251_cov_0.865169_g49710_i0 PRJNA715462 50506 251 0.865169 2.17157419 Actinobacteria bacterium BACL2 MAG-12 2900548 Bacteria Bacteria 146 4.059999999999999e-42   NR KRO31163.1 1655568 g49710 i0 97.6 0.99203187250996006 83 2 99.2 0 250 2 108 190 KRO31163.1 MAG: cobalamin biosynthesis protein CbiM [Actinobacteria bacterium BACL2 MAG-120802-bin41] diamond 249 146 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120802-bin41
29020738 29020738 PRJNA715462_P_NODE_53488_length_250_cov_0.870056_g52692_i0 PRJNA715462 53488 250 0.870056 2.17514 Clavibacter 1573 Bacteria Bacteria 164 2.37e-46   NR KRO53258.1 1655570 g52692 i0 100 11.952 83 0 99.6 0 2 250 273 355 KRO53258.1 MAG: ATP-dependent DNA helicase PcrA, partial [Actinobacteria bacterium BACL2 MAG-120820-bin50] diamond 2988 164 1 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120820-bin50

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;