RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA715462", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA715462 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4534580 4534580 PRJNA715462_P_NODE_53784_length_249_cov_1.488636_g52988_i0 PRJNA715462 53784 249 1.488636 3.70670364 Methanobrevibacter sp. AbM4 224719 Archaea Archaea 54.7 0.006   NTclustered gi|509083678|gb|CP004050.1| 224719 g52988 i0 100 0.116465863453815 29 0 12 0 78 106 1653229 1653201 Methanobrevibacter sp. AbM4, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. AbM4
4534595 4534595 PRJNA715462_P_NODE_54804_length_249_cov_0.875000_g54008_i0 PRJNA715462 54804 249 0.875 2.17875 Methanobacterium paludis 868131 Archaea Archaea 52.8 0.023   NTclustered gi|333824386|gb|CP002772.1| 868131 g54008 i0 96.774 0.124497991967871 31 1 12 0 70 100 1720585 1720615 Methanobacterium paludis strain SWAN1, complete genome blastn 31 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis
29272816 29272816 PRJNA715462_P_NODE_17789_length_448_cov_1.525333_g16993_i0 PRJNA715462 17789 448 1.525333 6.83349184 root 1 Root_unresolved Root_unresolved 54.7 2.34e-5   NR WP_292800363.1 66852 g16993 i0 27.5 1.99553571428571 149 81 99.1 6 4 447 894 1016 WP_292800363.1 hypothetical protein [Methanobrevibacter sp.] diamond 894 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;