RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA715462", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 6 ✖

tax_clade 1

  • Metamonada · 6 ✖

bioproject 1

  • PRJNA715462 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3257708 3257708 PRJNA715462_P_NODE_63923_length_244_cov_0.900585_g63127_i0 PRJNA715462 63923 244 0.900585 2.1974274 root 1 Root_unresolved Root_unresolved 119 7.43e-32   NR XP_001579633.1 412133 g63127 i0 69.6 10.6844262295082 79 24 97.1 0 243 7 106 184 XP_001579633.1 peptidyl-prolyl cis-trans isomerase protein [Trichomonas vaginalis G3] diamond 2607 119 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27273239 27273239 PRJNA715462_P_NODE_55583_length_248_cov_1.491429_g54787_i0 PRJNA715462 55583 248 1.491429 3.69874392 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 55.1 1.71e-6   NR XP_068365982.1 1144522 g54787 i0 50 0.532258064516129 44 21 53.2 1 146 15 183 225 XP_068365982.1 AGC family protein kinase [Tritrichomonas foetus] diamond 132 55.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28725721 28725721 PRJNA715462_P_NODE_45907_length_263_cov_1.621053_g45111_i0 PRJNA715462 45907 263 1.621053 4.26336939 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 90.9 1.59e-20   NR XP_067778711.1 135588 g45111 i0 51.2 6.84410646387833 86 40 98.1 1 260 3 72 155 XP_067778711.1 small GTP-binding protein [Histomonas meleagridis] diamond 1800 90.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29104745 29104745 PRJNA715462_P_NODE_58468_length_247_cov_0.885057_g57672_i0 PRJNA715462 58468 247 0.885057 2.18609079 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 47 0.00112   NR XP_068355315.1 1144522 g57672 i0 33.8 0.935222672064777 77 47 88.7 2 224 6 45 121 XP_068355315.1 Clan CA, family C1, cathepsin L-like cysteine peptidase [Tritrichomonas foetus] diamond 231 47 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30494360 30494360 PRJNA715462_P_NODE_21993_length_390_cov_1.570978_g21197_i0 PRJNA715462 21993 390 1.570978 6.1268142 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.3 1.88e-9   NR XP_068355458.1 1144522 g21197 i0 35.1 0.853846153846154 111 66 84.6 3 332 3 20 125 XP_068355458.1 Signal recognition particle receptor subunit beta [Tritrichomonas foetus] diamond 333 64.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30873438 30873438 PRJNA715462_P_NODE_66774_length_242_cov_0.911243_g65978_i0 PRJNA715462 66774 242 0.911243 2.20520806 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 52.8 1.05e-5   NR XP_067769028.1 135588 g65978 i0 66.7 0.446280991735537 36 12 44.6 0 131 238 337 372 XP_067769028.1 AGC family protein kinase [Histomonas meleagridis] diamond 108 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;