RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA715462", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA715462 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5809140 5809140 PRJNA715462_P_NODE_20525_length_408_cov_0.910448_g19729_i0 PRJNA715462 20525 408 0.910448 3.71462784 Pseudomonadati 3379134 Bacteria Bacteria 192 1.25e-60   NR WP_303680833.1 1100 g19729 i0 95 1.48529411764706 101 5 74.3 0 305 3 1 101 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 606 193 0.994818652849741 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum
31863989 31863989 PRJNA715462_P_NODE_8977_length_729_cov_2.230183_g8227_i0 PRJNA715462 8977 729 2.230183 16.25803407 FCB group 1783270 Bacteria Bacteria 239 3.83e-71   NR WP_068868131.1 1101 g8227 i0 57.4 13.0658436213992 195 81 80.2 2 586 2 13 205 WP_068868131.1 MULTISPECIES: phosphoenolpyruvate carboxykinase (GTP) [Prosthecochloris] diamond 9525 241 0.991701244813278 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;