RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA715462", tax_clade = "Candidatus Porisulfidus" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 1 ✖

tax_kingdom 1

tax_clade 1

  • Candidatus Porisulfidus · 1 ✖

bioproject 1

  • PRJNA715462 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1982084 1982084 PRJNA715462_P_NODE_46762_length_261_cov_1.281915_g45966_i0 PRJNA715462 46762 261 1.281915 3.34579815 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 111 3.87e-20   NTclustered gi|2893358403|emb|OZ220694.1| 3039487 g45966 i0 80.519 14.5593869731801 154 22 57 8 112 261 511772 511921 MAG: uncultured candidatus Porisulfidus sp. isolate d7aced61-d1d5-4481-893f-ca77f0084939 genome assembly, chromosome: 1 blastn 3800 111 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;