RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA715462", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA715462 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30431510 30431510 PRJNA715462_P_NODE_52193_length_250_cov_1.214689_g51397_i0 PRJNA715462 52193 250 1.214689 3.0367225 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 102 8.989999999999998e-24   NR MBX9809173.1 2044595 g51397 i0 94.4 0.648 54 3 64.8 0 163 2 292 345 MBX9809173.1 type II secretion system F family protein [Candidatus Altimarinota bacterium] diamond 162 102 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31094534 31094534 PRJNA715462_P_NODE_38155_length_286_cov_1.863850_g37359_i0 PRJNA715462 38155 286 1.86385 5.330611 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 65.5 9.31e-11   NR NJK47836.1 2044595 g37359 i0 59.1 1.43706293706294 44 18 46.2 0 154 285 12 55 NJK47836.1 TM2 domain-containing protein [Candidatus Altimarinota bacterium] diamond 411 65.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32201693 32201693 PRJNA715462_P_NODE_58838_length_247_cov_0.885057_g58042_i0 PRJNA715462 58838 247 0.885057 2.18609079 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 148 1.02e-39   NR NRH20421.1 2044595 g58042 i0 86.4 2.95141700404858 81 11 98.4 0 243 1 496 576 NRH20421.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 729 148 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;