RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA715461" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA715461 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
705125 705125 PRJNA715461_S_NODE_441_length_411_cov_1.967456_g367_i0 PRJNA715461 441 411 1.967456 8.08624416 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 521 2.5e-143   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g367 i0 98.316 19.8880778588808 297 5 72 0 56 352 2597 2301 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8174 521 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
2467560 2467560 PRJNA715461_S_NODE_142_length_694_cov_10.135266_g98_i0 PRJNA715461 142 694 10.135266 70.33874604 Vermamoeba 1260114 Tubulinea other_Eukaryota 1181 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g98 i0 100 41.7608069164265 639 0 92 0 4 642 4892 5530 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28982 1181 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7083796 7083796 PRJNA715461_S_NODE_366_length_451_cov_15.648148_g293_i0 PRJNA715461 366 451 15.648148 70.57314748 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 787 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g293 i0 100 39.8292682926829 426 0 94 0 4 429 6672 7097 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17963 787 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7083797 7083797 PRJNA715461_S_NODE_586_length_352_cov_16920.913978_g512_i0 PRJNA715461 586 352 16920.913978 59561.61720256 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 496 1.28e-135   NTclustered gi|300078496|gb|GU001158.1| 5778 g512 i0 100 101.772727272727 268 0 76 0 82 349 3687 3420 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 35824 496 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9633661 9633661 PRJNA715461_S_NODE_1168_length_231_cov_7.360759_g1094_i0 PRJNA715461 1168 231 7.360759 17.00335329 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 379 8.339999999999999e-101   NTclustered gi|1345607048|gb|MG969837.1| 5778 g1094 i0 99.519 90.0476190476191 208 1 90 0 3 210 177 384 Vermamoeba vermiformis isolate Hart4F small subunit ribosomal RNA gene, partial sequence blastn 20801 379 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10120772 10120772 PRJNA715461_S_NODE_1868_length_200_cov_4.417323_g1794_i0 PRJNA715461 1868 200 4.417323 8.834646 Tubulinea 555369 Tubulinea other_Eukaryota 300 5.62e-77   NTclustered gi|399764177|gb|JQ271688.1| 5778 g1794 i0 100 80.965 162 0 81 0 3 164 627 788 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 16193 300 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10120779 10120779 PRJNA715461_S_NODE_628_length_333_cov_27.373077_g554_i0 PRJNA715461 628 333 27.373077 91.15234641 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 525 1.5399999999999994e-144   NTclustered gi|909719645|gb|KT185625.1| 5778 g554 i0 100 33.1381381381381 284 0 85 0 47 330 3869 3586 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 11035 525 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13946055 13946055 PRJNA715461_S_NODE_1231_length_226_cov_16171.529412_g1157_i0 PRJNA715461 1231 226 16171.529412 36547.65647112 Tubulinea 555369 Tubulinea other_Eukaryota 259 1.1e-64   NTclustered gi|315318893|gb|HQ632781.1| 5778 g1157 i0 99.301 62.0884955752212 143 1 63 0 81 223 532 390 Hartmannella vermiformis strain H-7H 18S ribosomal RNA gene, partial sequence blastn 14032 259 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20318622 20318622 PRJNA715461_S_NODE_696_length_307_cov_4.307692_g622_i0 PRJNA715461 696 307 4.307692 13.22461444 Tubulinea 555369 Tubulinea other_Eukaryota 468 2.4e-127   NTclustered gi|399764177|gb|JQ271688.1| 5778 g622 i0 100 82.4104234527687 253 0 82 0 52 304 390 138 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 25300 468 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24143814 24143814 PRJNA715461_S_NODE_1479_length_212_cov_4.798561_g1405_i0 PRJNA715461 1479 212 4.798561 10.17294932 Tubulinea 555369 Tubulinea other_Eukaryota 315 2.15e-81   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g1405 i0 100 80.1556603773585 170 0 80 0 40 209 1159 990 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 16993 315 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;