RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA715461", tax_phylum = "Fusobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Fusobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA715461 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8358453 8358453 PRJNA715461_S_NODE_1167_length_231_cov_8.259494_g1093_i0 PRJNA715461 1167 231 8.259494 19.07943114 Fusobacterium mortiferum 850 Bacteria Bacteria 398 2.3e-106   NTclustered gi|1370540179|gb|CP028102.1| 469616 g1093 i0 100 472.645021645022 215 0 93 0 14 228 104071 104285 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 109181 398 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
17283198 17283198 PRJNA715461_S_NODE_1194_length_229_cov_8.474359_g1120_i0 PRJNA715461 1194 229 8.474359 19.40628211 Cetobacterium somerae 188913 Bacteria Bacteria 359 1.07e-94   NTclustered gi|2666488225|gb|CP143319.1| 188913 g1120 i0 98.068 417.484716157205 207 3 90 1 4 209 1318983 1318777 Cetobacterium somerae strain ceto chromosome, complete genome blastn 95604 359 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
19832079 19832079 PRJNA715461_S_NODE_156_length_658_cov_9.753846_g108_i0 PRJNA715461 156 658 9.753846 64.18030668 Fusobacterium mortiferum 850 Bacteria Bacteria 1136 0   NTclustered gi|1370540179|gb|CP028102.1| 469616 g108 i0 100 475.62462006079 615 0 93 0 1 615 104899 104285 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 312961 1136 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
24931693 24931693 PRJNA715461_S_NODE_1260_length_225_cov_35.453947_g1186_i0 PRJNA715461 1260 225 35.453947 79.77138075 Fusobacterium mortiferum 850 Bacteria Bacteria 333 6.379999999999999e-87   NTclustered gi|1370540179|gb|CP028102.1| 469616 g1186 i0 100 82.0977777777778 180 0 80 0 43 222 107305 107484 Fusobacterium mortiferum ATCC 9817 chromosome, complete genome blastn 18472 333 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;