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contig_metadata

29 rows where bioproject = "PRJNA715461" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 29 ✖

tax_clade 1

bioproject 1

  • PRJNA715461 · 29 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1192210 1192210 PRJNA715461_S_NODE_461_length_403_cov_10.439394_g387_i0 PRJNA715461 461 403 10.439394 42.07075782 Sessilida 1974272 SAR_Eukaryotes SAR_Eukaryotes 628 1.3999999999999994e-175   NTclustered gi|759083557|gb|KM222174.1| 1607876 g387 i0 98.324 87.9379652605459 358 6 89 0 27 384 1 358 Epistylis sp. FG-2015 voucher SZ2011052302 large subunit ribosomal RNA gene, partial sequence blastn 35439 634 0.990536277602524 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Epistylidae Epistylis Epistylis sp. FG-2015
1981140 1981140 PRJNA715461_S_NODE_282_length_525_cov_10565.634956_g219_i0 PRJNA715461 282 525 10565.634956 55469.583519 Vorticellides astyliformis 1173325 SAR_Eukaryotes SAR_Eukaryotes 424 9.47e-114   NTclustered gi|562815644|gb|KF639908.1| 1173325 g219 i0 84.375 16.472380952381 448 52 84 13 4 446 413 847 Vorticellides astyliformis small subunit ribosomal RNA gene, partial sequence blastn 8648 424 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticellides Vorticellides astyliformis
1981143 1981143 PRJNA715461_S_NODE_462_length_402_cov_7170.902736_g388_i0 PRJNA715461 462 402 7170.902736 28827.02899872 Tetrahymena acanthophora 2704174 SAR_Eukaryotes SAR_Eukaryotes 569 8.6e-158   NTclustered gi|2082965250|gb|MZ827090.1| 2704174 g388 i0 99.054 77.7985074626866 317 3 79 0 83 399 807 491 Tetrahymena acanthophora isolate NB176 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31275 569 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena acanthophora
2467566 2467566 PRJNA715461_S_NODE_862_length_270_cov_12088.989848_g788_i0 PRJNA715461 862 270 12088.989848 32640.2725896 root 1 Root_unresolved Root_unresolved 350 7.84e-92   NTclustered gi|10832|emb|X54512.1| 5911 g788 i0 98.485 63.8444444444444 198 3 73 0 70 267 8324 8127 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 17238 350 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3256504 3256504 PRJNA715461_S_NODE_543_length_368_cov_1.220339_g469_i0 PRJNA715461 543 368 1.220339 4.49084752 Thuricola similis 2784598 SAR_Eukaryotes SAR_Eukaryotes 381 3.9299999999999986e-101   NTclustered gi|2088246216|ref|NC_057079.1| 2784598 g469 i0 91.912 59.2826086956522 272 22 74 0 15 286 12267 11996 Thuricola similis strain CUIT mitochondrion, complete genome blastn 21816 381 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vaginicolidae Thuricola Thuricola similis
3743928 3743928 PRJNA715461_S_NODE_703_length_305_cov_1131.818966_g629_i0 PRJNA715461 703 305 1131.818966 3452.0478463 root 1 Root_unresolved Root_unresolved 372 1.92e-98   NTclustered gi|10832|emb|X54512.1| 5911 g629 i0 99.51 59.2918032786885 204 1 67 0 99 302 8330 8127 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18084 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
3743931 3743931 PRJNA715461_S_NODE_803_length_282_cov_351.148325_g729_i0 PRJNA715461 803 282 351.148325 990.2382765 root 1 Root_unresolved Root_unresolved 372 1.76e-98   NTclustered gi|10832|emb|X54512.1| 5911 g729 i0 99.51 64.1312056737589 204 1 72 0 76 279 8330 8127 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18085 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
5020478 5020478 PRJNA715461_S_NODE_1064_length_243_cov_27871.205882_g990_i0 PRJNA715461 1064 243 27871.205882 67727.03029326 root 1 Root_unresolved Root_unresolved 294 3.3e-75   NTclustered gi|10932|emb|X56533.1| 5883 g990 i0 95.187 76.8518518518518 187 8 77 1 54 240 1129 944 G.chattoni small subunit ribosomal RNA gene blastn 18675 294 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Glaucomidae Glaucoma Glaucoma chattoni
5020479 5020479 PRJNA715461_S_NODE_1084_length_241_cov_2.428571_g1010_i0 PRJNA715461 1084 241 2.428571 5.85285611 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 435 1.84e-117   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g1010 i0 99.58 85.6431535269709 238 1 99 0 1 238 811 574 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 20640 435 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
6296249 6296249 PRJNA715461_S_NODE_445_length_409_cov_14653.714286_g371_i0 PRJNA715461 445 409 14653.714286 59933.69142974 Tetrahymenidae 291294 SAR_Eukaryotes SAR_Eukaryotes 592 1.8699999999999998e-164   NTclustered gi|2624251057|gb|OR858827.1| 5914 g371 i0 99.69 78.9437652811736 323 1 79 0 4 326 133 455 Tetrahymena corlissi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence blastn 32288 592 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena corlissi
8358467 8358467 PRJNA715461_S_NODE_867_length_270_cov_1.147208_g793_i0 PRJNA715461 867 270 1.147208 3.0974616 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 372 1.67e-98   NTclustered gi|11466252|ref|NC_000862.1| 5908 g793 i0 94.979 28.8185185185185 239 9 88 3 4 241 32669 32905 Tetrahymena pyriformis mitochondrion, complete genome blastn 7781 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
8845190 8845190 PRJNA715461_S_NODE_987_length_249_cov_26684.948864_g913_i0 PRJNA715461 987 249 26684.948864 66445.52267136 root 1 Root_unresolved Root_unresolved 305 1.57e-78   NTclustered gi|1621572405|gb|MH051920.1| 5893 g913 i0 100 66.2650602409639 165 0 66 0 82 246 1009 845 Tetrahymena borealis strain 1630/5A small subunit ribosomal RNA gene, partial sequence blastn 16500 305 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena borealis
10909222 10909222 PRJNA715461_S_NODE_469_length_398_cov_7211.996923_g395_i0 PRJNA715461 469 398 7211.996923 28703.74775354 Opisthonecta sp. FG-2015 1607889 SAR_Eukaryotes SAR_Eukaryotes 477 5.31e-130   NTclustered gi|759083562|gb|KM222179.1| 1607889 g395 i0 93.968 43.4623115577889 315 19 79 0 1 315 431 745 Opisthonecta sp. FG-2015 voucher SZ2011052301 large subunit ribosomal RNA gene, partial sequence blastn 17298 477 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta sp. FG-2015
10909223 10909223 PRJNA715461_S_NODE_509_length_381_cov_5965.512987_g435_i0 PRJNA715461 509 381 5965.512987 22728.60448047 Vorticella sp. 4 JG-2011 1295638 SAR_Eukaryotes SAR_Eukaryotes 536 8.229999999999999e-148   NTclustered gi|512134943|gb|JX178902.1| 1295638 g435 i0 98.997 76.8687664041995 299 3 78 0 80 378 1346 1048 Vorticella sp. 4 JG-2011 clone 2 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29287 536 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 4 JG-2011
11395785 11395785 PRJNA715461_S_NODE_1029_length_246_cov_5.653179_g955_i0 PRJNA715461 1029 246 5.653179 13.90682034 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 350 7.04e-92   NTclustered gi|310873|gb|M26360.1|TETMEL16SI 5901 g955 i0 100 76.6056910569106 189 0 77 0 4 192 1565 1753 Tetrahymena malaccensis 16S ribosomal RNA gene, intron blastn 18845 350 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
11395797 11395797 PRJNA715461_S_NODE_829_length_277_cov_11853.151961_g755_i0 PRJNA715461 829 277 11853.151961 32833.23093197 root 1 Root_unresolved Root_unresolved 372 1.72e-98   NTclustered gi|10832|emb|X54512.1| 5911 g755 i0 99.51 65.2851985559567 204 1 74 0 4 207 8127 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18084 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
12671805 12671805 PRJNA715461_S_NODE_690_length_308_cov_23204.855319_g616_i0 PRJNA715461 690 308 23204.855319 71470.95438252 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 355 1.96e-93   NTclustered gi|966204127|emb|LN870015.1| 1683281 g616 i0 100 62.3409090909091 192 0 62 0 4 195 572 763 Oligohymenophorea sp. bLPN1 partial 18S rRNA gene, isolate bLPN1 Oligohymenophorean blastn 19201 355 1 Eukaryota Sar   Ciliophora Oligohymenophorea       Oligohymenophorea sp. bLPN1
13946071 13946071 PRJNA715461_S_NODE_831_length_277_cov_9593.921569_g757_i0 PRJNA715461 831 277 9593.921569 26575.16274613 root 1 Root_unresolved Root_unresolved 372 1.72e-98   NTclustered gi|10832|emb|X54512.1| 5911 g757 i0 99.51 65.2851985559567 204 1 74 0 4 207 8127 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18084 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
13946072 13946072 PRJNA715461_S_NODE_851_length_272_cov_23866.648241_g777_i0 PRJNA715461 851 272 23866.648241 64917.28321552 root 1 Root_unresolved Root_unresolved 355 1.7e-93   NTclustered gi|10832|emb|X54512.1| 5911 g777 i0 98.522 63.6470588235294 203 0 74 2 70 269 8329 8127 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 17312 355 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
15220742 15220742 PRJNA715461_S_NODE_372_length_448_cov_6439.861333_g299_i0 PRJNA715461 372 448 6439.861333 28850.57877184 root 1 Root_unresolved Root_unresolved 665 0   NTclustered gi|363412127|gb|JN120201.1| 6026 g299 i0 99.725 80.9308035714286 363 1 81 0 4 366 438 800 Opisthonecta henneguyi isolate 43Opisthonectau1S1S2 18S ribosomal RNA gene, partial sequence blastn 36257 671 0.991058122205663 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Opisthonectidae Opisthonecta Opisthonecta henneguyi
16495114 16495114 PRJNA715461_S_NODE_1173_length_230_cov_30171.000000_g1099_i0 PRJNA715461 1173 230 30171 69393.3 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 276 1.12e-69   NTclustered gi|966204127|emb|LN870015.1| 1683281 g1099 i0 100 64.7826086956522 149 0 65 0 4 152 572 720 Oligohymenophorea sp. bLPN1 partial 18S rRNA gene, isolate bLPN1 Oligohymenophorean blastn 14900 276 1 Eukaryota Sar   Ciliophora Oligohymenophorea       Oligohymenophorea sp. bLPN1
19043985 19043985 PRJNA715461_S_NODE_835_length_276_cov_12148.709360_g761_i0 PRJNA715461 835 276 12148.70936 33530.4378336 root 1 Root_unresolved Root_unresolved 366 7.98e-97   NTclustered gi|10832|emb|X54512.1| 5911 g761 i0 99.02 63.5 204 2 74 0 4 207 8127 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 17526 366 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
20318615 20318615 PRJNA715461_S_NODE_256_length_544_cov_8.261146_g198_i0 PRJNA715461 256 544 8.261146 44.94063424 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 974 0   NTclustered gi|2082965253|gb|MZ827093.1| 2704173 g198 i0 99.258 80.6360294117647 539 4 99 0 6 544 1293 755 Tetrahymena scolopax isolate GP171 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 43866 979 0.994892747701736 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena scolopax
21107579 21107579 PRJNA715461_S_NODE_877_length_268_cov_5.876923_g803_i0 PRJNA715461 877 268 5.876923 15.75015364 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 363 9.979999999999997e-96   NTclustered gi|10782|emb|X54004.1| 5908 g803 i0 98.077 20.4179104477612 208 4 78 0 3 210 3134 3341 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 5472 363 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
21594445 21594445 PRJNA715461_S_NODE_457_length_404_cov_10.296073_g383_i0 PRJNA715461 457 404 10.296073 41.59613492 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 579 1.4399999999999994e-160   NTclustered gi|10782|emb|X54004.1| 5908 g383 i0 97.633 73.1485148514851 338 7 84 1 65 402 1921 1585 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 29552 584 0.991438356164384 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
21594450 21594450 PRJNA715461_S_NODE_997_length_249_cov_1.534091_g923_i0 PRJNA715461 997 249 1.534091 3.81988659 Chilodonella 151076 SAR_Eukaryotes SAR_Eukaryotes 326 1.2e-84   NTclustered gi|13194559|gb|AF300281.1|AF300281 151077 g923 i0 98.901 72.2289156626506 182 2 73 0 4 185 1211 1392 Chilodonella uncinata clone 1 18S small subunit ribosomal RNA gene, partial sequence blastn 17985 326 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella uncinata
24143823 24143823 PRJNA715461_S_NODE_619_length_335_cov_8992.484733_g545_i0 PRJNA715461 619 335 8992.484733 30124.82385555 Tetrahymenidae 291294 SAR_Eukaryotes SAR_Eukaryotes 460 4.43e-125   NTclustered gi|2624251057|gb|OR858827.1| 5914 g545 i0 99.216 76.0835820895522 255 2 76 0 4 258 133 387 Tetrahymena corlissi isolate LLH20220320 small subunit ribosomal RNA gene, partial sequence blastn 25488 460 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena corlissi
24143825 24143825 PRJNA715461_S_NODE_699_length_306_cov_23754.879828_g625_i0 PRJNA715461 699 306 23754.879828 72689.93227368 root 1 Root_unresolved Root_unresolved 372 1.93e-98   NTclustered gi|10832|emb|X54512.1| 5911 g625 i0 99.51 59.0980392156863 204 1 67 0 100 303 8330 8127 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 18084 372 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
24143826 24143826 PRJNA715461_S_NODE_739_length_298_cov_274.128889_g665_i0 PRJNA715461 739 298 274.128889 816.90408922 root 1 Root_unresolved Root_unresolved 364 3.1299999999999986e-96   NTclustered gi|10832|emb|X54512.1| 5911 g665 i0 99.02 58.7885906040268 204 1 68 1 4 206 8127 8330 T. thermophila rdn A+ gene for pre-RNA, 17S rRNA, 5.8S rRNA, 26S rRNA blastn 17519 364 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;