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contig_metadata

2 rows where bioproject = "PRJNA715461", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA715461 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13458839 13458839 PRJNA715461_S_NODE_891_length_266_cov_2.497409_g817_i0 PRJNA715461 891 266 2.497409 6.64310794 Mus musculus 10090 Chordata Chordata 475 1.2199999999999997e-129   NTclustered gi|14269443|gb|AF378830.1|AF378830 10090 g817 i0 99.24 92.9172932330827 263 2 99 0 4 266 444 706 Mus musculus cytochrome c oxidase subunit II (Cox2) mRNA, complete cds; mitochondrial gene for mitochondrial product blastn 24716 475 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18556959 18556959 PRJNA715461_S_NODE_1035_length_246_cov_0.872832_g961_i0 PRJNA715461 1035 246 0.872832 2.14716672 Mus musculus 10090 Chordata Chordata 438 1.4599999999999996e-118   NTclustered gi|12843185|dbj|AK008782.1| 10090 g961 i0 99.177 53.2439024390244 243 2 99 0 4 246 385 627 Mus musculus adult male stomach cDNA, RIKEN full-length enriched library, clone:2210039G11 product:fatty acid binding protein 5, epidermal, full insert sequence blastn 13098 438 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;