RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA715461", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA715461 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1192199 1192199 PRJNA715461_S_NODE_1261_length_225_cov_25.309211_g1187_i0 PRJNA715461 1261 225 25.309211 56.94572475 Eukaryota 2759 Fungi Fungi 296 8.37e-76   NTclustered gi|2558627581|gb|OR405830.1| 76775 g1187 i0 100 72.5333333333333 160 0 71 0 21 180 338 497 Malassezia restricta strain GSVCC20Z3-2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 16320 296 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
11395786 11395786 PRJNA715461_S_NODE_1149_length_233_cov_2.143750_g1075_i0 PRJNA715461 1149 233 2.14375 4.9949375 Agaricomycetes 155619 Fungi Fungi 158 4.3e-34   NTclustered gi|77379307|gb|DQ208412.1| 5315 g1075 i0 80 138.218884120172 225 35 94 10 16 233 1483 1262 Ganoderma lucidum strain C-1 large subunit ribosomal RNA gene, partial sequence blastn 32205 159 0.993710691823899 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Ganoderma Ganoderma lucidum
13946051 13946051 PRJNA715461_S_NODE_1111_length_238_cov_14625.254545_g1037_i0 PRJNA715461 1111 238 14625.254545 34808.1058171 Eukaryota 2759 Fungi Fungi 287 5.38e-73   NTclustered gi|406205|dbj|D12803.1|ERHSSRD3 5414 g1037 i0 95.082 66.6218487394958 183 8 77 1 56 238 1134 953 Erythrobasidium hasegawianum gene for small subunit ribosomal RNA blastn 15856 287 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Erythrobasidiales Erythrobasidiaceae Erythrobasidium Erythrobasidium hasegawianum
21594449 21594449 PRJNA715461_S_NODE_897_length_264_cov_1063.429319_g823_i0 PRJNA715461 897 264 1063.429319 2807.45340216 Basidiomycota 5204 Fungi Fungi 287 6.07e-73   NTclustered gi|207693271|gb|FJ196163.1| 29899 g823 i0 100 59.2916666666667 155 0 59 0 1 155 930 1084 Cystobasidium minutum strain DBSC-5 18S ribosomal RNA gene, partial sequence blastn 15653 287 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Cystobasidiales Cystobasidiaceae Cystobasidium Cystobasidium minutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;