RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA713989" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA713989 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1979642 1979642 PRJNA713989_S_NODE_8042_length_195_cov_1.534247_g7982_i0 PRJNA713989 8042 195 1.534247 2.99178165 Leucosporidium scottii 5278 Fungi Fungi 344 2.48e-90   NTclustered gi|1358186634|gb|MH047191.1| 5278 g7982 i0 98.462 100.097435897436 195 3 100 0 1 195 4009 3815 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19519 344 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
3254705 3254705 PRJNA713989_S_NODE_11903_length_167_cov_0.864407_g11843_i0 PRJNA713989 11903 167 0.864407 1.44355969 Malassezia restricta 76775 Fungi Fungi 276 7.64e-70   NTclustered gi|1546636707|ref|XM_027629996.1| 76775 g11843 i0 96.407 2.49700598802395 167 6 100 0 1 167 168 334 Malassezia restricta DNA-directed RNA polymerase II subunit RPB1 (MRET_3369), partial mRNA blastn 417 276 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
7082033 7082033 PRJNA713989_S_NODE_12006_length_167_cov_0.864407_g11946_i0 PRJNA713989 12006 167 0.864407 1.44355969 Leucosporidium scottii 5278 Fungi Fungi 267 4.599999999999999e-67   NTclustered gi|1358186634|gb|MH047191.1| 5278 g11946 i0 95.758 51.2395209580838 165 7 99 0 1 165 4195 4031 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8557 267 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
13457126 13457126 PRJNA713989_S_NODE_13731_length_162_cov_0.902655_g13671_i0 PRJNA713989 13731 162 0.902655 1.4623011 Rhodotorula glutinis 5535 Fungi Fungi 183 4.58e-42   NTclustered gi|225134685|gb|FJ345357.1| 5535 g13671 i0 87.037 3 162 21 100 0 1 162 2606 2767 Rhodotorula glutinis strain ATCC 16726 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 486 183 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
19830313 19830313 PRJNA713989_S_NODE_11976_length_167_cov_0.864407_g11916_i0 PRJNA713989 11976 167 0.864407 1.44355969 Malassezia restricta 76775 Fungi Fungi 303 3.5e-78   NTclustered gi|1546638219|ref|XM_027630751.1| 76775 g11916 i0 99.401 1 167 1 100 0 1 167 398 232 Malassezia restricta actin-related protein 3 (MRET_4124), partial mRNA blastn 167 303 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;